Evidence map›Paper›PMID 25583493›Full record

Trial reportProceedings of the National Academy of Sciences of the United States of America2015

Novel recurrently mutated genes in African American colon cancers.

Kishore Guda, Martina L Veigl, Vinay Varadan, Arman Nosrati, Lakshmeswari Ravi, James Lutterbaugh, Lydia Beard, James K V Willson, W David Sedwick, Zhenghe John Wang and 6 more

Open access · bronzeAbstract readClinical Trial
In one paragraph

Trial report in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 143 citations in OpenAlex.

  1. Trial
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  8. Black-White disparities across the colorectal cancer care continuum in the USA.Nature reviews. Gastroenterology & hepatology · 2025
    Review
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  15. Review
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  19. Clinicopathological Characteristics and Mutational Landscape ofCurrent issues in molecular biology · 2023
    Article
  20. Molecular Subtypes of Head and Neck Cancer in Patients of African Ancestry.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Kishore GudaDivision of General Medical Sciences-Oncology, Case Comprehensive Cancer Center, and Department of Medicine.
Martina L VeiglCase Comprehensive Cancer Center, and Department of Medicine.
Vinay VaradanDivision of General Medical Sciences-Oncology, Case Comprehensive Cancer Center, and.
Arman NosratiDivision of Hematology and Oncology.
Lakshmeswari RaviDivision of Hematology and Oncology.
James LutterbaughDivision of Hematology and Oncology.
Lydia BeardDivision of Hematology and Oncology.
James K V WillsonHarold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390; and.
W David SedwickCase Comprehensive Cancer Center, and Department of Medicine, Division of Hematology and Oncology.
Zhenghe John WangCase Comprehensive Cancer Center, and Department of Genetics and Genome Sciences.
Neil MolyneauxDepartment of Genetics and Genome Sciences.
Alexander MironDepartment of Genetics and Genome Sciences.
Mark D AdamsJ. Craig Venter Institute, La Jolla, CA 92037.
Robert C ElstonCase Comprehensive Cancer Center, and Department of Epidemiology and Biostatistics.
Sanford D MarkowitzCase Comprehensive Cancer Center, and Department of Medicine, Division of Hematology and Oncology, Case Medical Center, Case Western Reserve University, Cleveland, OH 44106; sxm10@cwru.edu.
Joseph E WillisCase Comprehensive Cancer Center, and Department of Medicine, Case Medical Center, Case Western Reserve University, Cleveland, OH 44106; Department of Pathology.
Case Comprehensive Cancer CenterPalmetto Hematology Oncology · USCancer Research And Biostatistics · USCase Western Reserve University · USJ. Craig Venter Institute · USThe University of Texas Southwestern Medical Center · US

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI Amar Desai · 1987 to 2026
$142.3M
Clinical and Translational Science Collaborative of ClevelandUL1TR000439 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$50.0M
Targeting 15-PGDH in Colon Cancer Prognosis, Prediction, Treatment and PreventionP50CA150964 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARKOWITZ, SANFORD D. · 2011 to 2022
$24.6M
Mechanisms of suppression of colon cancer by receptor tyrosine phosphatase PTPRTR01CA127590 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI WANG, ZHENGHE · 2007 to 2017
$2.9M
Novel O-glycosylation Gene Mutations in Colon CancerK08CA148980 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GUDA, KISHORE · 2010 to 2014
$682k
Identification of Significant Race Associated Colon Cancer Drive Gene MutationsR21CA149349 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI WILLIS, JOSEPH EDWARD · 2011 to 2012
$376k
NCATS NIH HHS UL1 TR000439NCI NIH HHS K08 CA148980NCI NIH HHS KO8 CA148980NCI NIH HHS P30 CA043703NCI NIH HHS P50 CA150964NCI NIH HHS R01 CA127590NCI NIH HHS R21 CA149349
6 · The paper itself

Abstract

We used whole-exome and targeted sequencing to characterize somatic mutations in 103 colorectal cancers (CRC) from African Americans, identifying 20 new genes as significantly mutated in CRC. Resequencing 129 Caucasian derived CRCs confirmed a 15-gene set as a preferential target for mutations in African American CRCs. Two predominant genes, ephrin type A receptor 6 (EPHA6) and folliculin (FLCN), with mutations exclusive to African American CRCs, are by genetic and biological criteria highly likely African American CRC driver genes. These previously unsuspected differences in the mutational landscapes of CRCs arising among individuals of different ethnicities have potential to impact on broader disparities in cancer behaviors.

Indexed as

MutationBlack or African AmericanColonic NeoplasmsExomeFemaleGenome-Wide Association StudyHumansMaleProto-Oncogene ProteinsReceptor, EphA6Tumor Suppressor ProteinsWhite PeopleFLCN protein, humanProto-Oncogene ProteinsReceptor, EphA6Tumor Suppressor ProteinsAfrican AmericanCaucasiancolon cancermutationnext-generation sequencing

Identifiers

PMID25583493
PMCPMC4313860
OpenAlexW2155659597

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.