Evidence map›Paper›PMID 25583491›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Altered ubiquitin causes perturbed calcium homeostasis, hyperactivation of calpain, dysregulated differentiation, and cataract.

Ke Liu, Lei Lyu, David Chin, Junyuan Gao, Xiurong Sun, Fu Shang, Andrea Caceres, Min-Lee Chang, Sheldon Rowan, Junmin Peng and 4 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Smurf1 Modulates Smad Signaling Pathway in Fibrotic Cataract Formation.Investigative ophthalmology & visual science · 2024
    Article
  6. Review
  7. Inhibitory effect of Nifedipine on aldose reductase delays cataract progression.Naunyn-Schmiedeberg's archives of pharmacology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Proteostasis in aging-associated ocular disease.Molecular aspects of medicine · 2022
    Review
  12. Article
  13. Article
  14. Article
  15. Connexin Mutants Cause Cataracts Through Deposition of Apatite.Frontiers in cell and developmental biology · 2022
    Article
  16. Review
  17. Mutations of CX46/CX50 and Cataract Development.Frontiers in molecular biosciences · 2022
    Review
  18. Review
  19. Article
  20. Aged Nrf2-Null Mice Develop All Major Types of Age-Related Cataracts.Investigative ophthalmology & visual science · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 3 countries.

Ke LiuLaboratory for Nutrition and Vision Research, US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA 02111; Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Science, Sichuan University, Chengdu, Sichuan 610064, People's Republic of China; allen.taylor@tufts.edu kliu@scu.edu.cn.
Lei LyuLaboratory for Nutrition and Vision Research, US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA 02111; Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Science, Sichuan University, Chengdu, Sichuan 610064, People's Republic of China;
David ChinDepartments of Structural Biology and Developmental Neurobiology, St. Jude Proteomics Facility, St. Jude Children's Research Hospital, Memphis, TN 38105;
Junyuan GaoDepartment of Physiology and Biophysics, State University of New York, Stony Brook, NY 11794;
Xiurong SunDepartment of Physiology and Biophysics, State University of New York, Stony Brook, NY 11794;
Fu ShangLaboratory for Nutrition and Vision Research, US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA 02111;
Andrea CaceresLaboratory for Nutrition and Vision Research, US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA 02111;
Min-Lee ChangLaboratory for Nutrition and Vision Research, US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA 02111;
Sheldon RowanLaboratory for Nutrition and Vision Research, US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA 02111;
Junmin PengDepartments of Structural Biology and Developmental Neurobiology, St. Jude Proteomics Facility, St. Jude Children's Research Hospital, Memphis, TN 38105;
Richard MathiasDepartment of Physiology and Biophysics, State University of New York, Stony Brook, NY 11794;
Hideko KasaharaPhysiology and Functional Genomics, University of Florida College of Medicine, Gainesville, FL 32610-0274; and.
Shuhong JiangLaboratory for Nutrition and Vision Research, US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA 02111;
Allen TaylorLaboratory for Nutrition and Vision Research, US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA 02111; Department of Biological Chemistry, Weizmann Institute of Science, Rehovot 7610001, Israel allen.taylor@tufts.edu kliu@scu.edu.cn.
United States Department of Agriculture · USTufts University · USSt. Jude Children's Research Hospital · USStony Brook University · USFlorida College · USSichuan University · CNState University of New York · US

Funding

VOLUME REGULATION IN NORMAL AND CATARACTOUS LENSESR01EY006391 · NEI · STATE UNIVERSITY NEW YORK STONY BROOK · PI MATHIAS, RICHARD T · 1985 to 2014
$5.4M
Ubiquitin Function In Eye LensR01EY013250 · NEI · TUFTS UNIVERSITY BOSTON · PI TAYLOR, ALLEN · 2001 to 2012
$4.0M
Mechanistically linking AMD, glycemic index and protein homeostasisR01EY021212 · NEI · TUFTS UNIVERSITY BOSTON · PI TAYLOR, ALLEN · 2011 to 2013
$1.2M
Proteomics identification of ubiquitin enzyme substratesR21NS081571 · NINDS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PENG, JUNMIN · 2012 to 2013
$472k
NEI NIH HHS R01 EY006391NEI NIH HHS R01 EY013250NEI NIH HHS R01 EY021212NEI NIH HHS R01EY06391NEI NIH HHS R01EY13250NEI NIH HHS R01EY21212NINDS NIH HHS R21 NS081571NINDS NIH HHS R21NS081571
6 · The paper itself

Abstract

Although the ocular lens shares many features with other tissues, it is unique in that it retains its cells throughout life, making it ideal for studies of differentiation/development. Precipitation of proteins results in lens opacification, or cataract, the major blinding disease. Lysines on ubiquitin (Ub) determine fates of Ub-protein substrates. Information regarding ubiquitin proteasome systems (UPSs), specifically of K6 in ubiquitin, is undeveloped. We expressed in the lens a mutant Ub containing a K6W substitution (K6W-Ub). Protein profiles of lenses that express wild-type ubiquitin (WT-Ub) or K6W-Ub differ by only ∼2%. Despite these quantitatively minor differences, in K6W-Ub lenses and multiple model systems we observed a fourfold Ca(2+) elevation and hyperactivation of calpain in the core of the lens, as well as calpain-associated fragmentation of critical lens proteins including Filensin, Fodrin, Vimentin, β-Crystallin, Caprin family member 2, and tudor domain containing 7. Truncations can be cataractogenic. Additionally, we observed accumulation of gap junction Connexin43, and diminished Connexin46 levels in vivo and in vitro. These findings suggest that mutation of Ub K6 alters UPS function, perturbs gap junction function, resulting in Ca(2+) elevation, hyperactivation of calpain, and associated cleavage of substrates, culminating in developmental defects and a cataractous lens. The data show previously unidentified connections between UPS and calpain-based degradative systems and advance our understanding of roles for Ub K6 in eye development. They also inform about new approaches to delay cataract and other protein precipitation diseases.

Indexed as

CalpainCataractEye ProteinsLens, CrystallineUbiquitinAmino Acid SubstitutionAnimalsCalciumEnzyme ActivationGap JunctionsHeLa CellsHumansMiceMice, TransgenicMutation, MissenseProteasome Endopeptidase ComplexCalciumCalpainEye ProteinsProteasome Endopeptidase ComplexUbiquitincalpaincataractconnexindevelopmentubiqutin

Identifiers

PMID25583491
PMCPMC4313858
OpenAlexW2078520364

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.