Evidence map›Paper›PMID 25583212›Full record

ArticleTropical medicine & international health : TM & IH2015

Identifying locations of recent TB transmission in rural Uganda: a multidisciplinary approach.

Gabriel Chamie, Bonnie Wandera, Carina Marquez, Midori Kato-Maeda, Moses R Kamya, Diane V Havlir, Edwin D Charlebois

Abstract read
In one paragraph

Article in Tropical medicine & international health : TM & IH, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Role of casual contact in drug-resistant tuberculosis transmission: a molecular epidemiology study.American journal of respiratory and critical care medicine · 2026
    Article
  6. Article
  7. Article
  8. Incident Tuberculosis Infection Is Associated With Alcohol Use in Adults in Rural Uganda.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2025
    Article
  9. Mobility patterns, activity locations, and TB in Nairobi, Kenya.The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease · 2025
    Article
  10. Article
  11. Incidence of tuberculous infection in a TB-endemic city.The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease · 2024
    Article
  12. Open forum infectious diseases · 2024
    Article
  13. Article
  14. Article
  15. Heterogeneity of Mycobacterium tuberculosis Strains Circulating in Panama's Western Region.The American journal of tropical medicine and hygiene · 2023
    Article
  16. The Association Between Social Network Characteristics and Tuberculosis Infection Among Adults in 9 Rural Ugandan Communities.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
    Article
  17. Article
  18. Article
  19. Excess Risk of Tuberculosis Infection Among Extra-household Contacts of Tuberculosis Cases in an African City.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Gabriel ChamieHIV/AIDS Division, Department of Medicine, San Francisco General Hospital, University of California, San Francisco, CA, USA; Makerere University-University of California, San Francisco (MU-UCSF) Research Collaboration, Kampala, Uganda.
Bonnie Wandera
Carina Marquez
Midori Kato-Maeda
Moses R Kamya
Diane V Havlir
Edwin D Charlebois

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Ujima Mentoring ProgramP30MH062246 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Sheri Ann Lippman · 2001 to 2026
$57.4M
Training in HIV Translational ResearchT32AI060530 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Diane V Havlir · 2005 to 2026
$6.4M
Childhood Tuberculosis Infection Among School-Age Children in Rural UgandaK23AI118592 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARQUEZ, CARINA · 2015 to 2019
$946k
Molecular Epidemiology and Geospatial Analysis of TB Transmission in UgandaK23AI095034 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHAMIE, GABRIEL · 2011 to 2015
$637k
NIAID NIH HHS K23 AI095034NIAID NIH HHS K23 AI118592NIAID NIH HHS P30 AI027763NIAID NIH HHS T32 AI060530NIMH NIH HHS P30 MH062246
6 · The paper itself

Abstract

objectivesTargeting high Tuberculosis (TB) transmission sites may offer a novel approach to TB prevention in sub-Saharan Africa. We sought to characterise TB transmission sites in a rural Ugandan township.

methodsWe recruited adults starting TB treatment in Tororo, Uganda, over 1 year. Fifty four TB cases provided names of frequent contacts, sites of residence, health care, work and social activities, and two sputum samples. Mycobacterium tuberculosis (MTB) culture-positive specimens underwent spoligotyping to identify strains with shared genotypes. We visualised TB case social networks, and obtained, mapped and geo-coded global positioning system measures for every location that cases reported frequenting 1 month before treatment. Locations of spatial overlap among genotype-clustered cases were considered potential transmission sites.

resultsSix distinct genotypic clusters were identified involving 21 of 33 (64%) MTB culture-positive, genotyped cases; none shared a home. Although 18 of 54 (33%) TB cases shared social network ties, none of the genotype-clustered cases shared social ties. Using spatial analysis, we identified potential sites of within-cluster TB transmission for five of six genotypic clusters. All sites but one were healthcare and social venues, including sites of drinking, worship and marketplaces. Cases reported spending the largest proportion of pre-treatment person-time (22.4%) at drinking venues.

conclusionsUsing molecular epidemiology, geospatial and social network data from adult TB cases identified at clinics, we quantified person-time spent at high-risk locations across a rural Ugandan community and determined the most likely sites of recent TB transmission to be healthcare and social venues. These sites may not have been identified using contact investigation alone.

Indexed as

Mycobacterium tuberculosisResidence CharacteristicsRural PopulationAdultFemaleGenotypeHumansMaleMolecular EpidemiologyTuberculosisUgandaÁfrica ruraldinámicas de transmisióndynamiques de la transmissionepidemiología molecularépidémiologie moléculairemolecular epidemiologyrural Africatransmission dynamicstuberculosetuberculosiszone rurale d'Afrique

Identifiers

PMID25583212
PMCPMC4355181

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.