Evidence map›Paper›PMID 25581684›Full record

ArticleJournal of biomechanical engineering2015

Epigenetic changes during mechanically induced osteogenic lineage commitment.

Julia C Chen, Mardonn Chua, Raymond B Bellon, Christopher R Jacobs

Open access · greenAbstract read
In one paragraph

Article in Journal of biomechanical engineering, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Review
  3. Fenoldopam Sensitizes Primary Cilia-Mediated Mechanosensing to Promote Osteogenic Intercellular Signaling and Whole Bone Adaptation.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2022
    Article
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  6. Article
  7. Review
  8. Article
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  10. Review
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  12. [Role of DNA methylation in regulation of osteogenic differentiation of stem cells].Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2016
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Julia C Chen
Mardonn Chua
Raymond B Bellon
Christopher R Jacobs
Columbia University · USUniversity of British Columbia · CA

Funding

Primary cilia as mechanotransducers in boneR01AR062177 · NIAMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GUO, X. EDWARD · 2012 to 2021
$3.9M
Multidisciplinary Engineering Training in Musculoskeletal ResearchT32AR059038 · NIAMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI ATESHIAN, GERARD A. · 2011 to 2015
$1.3M
Primary Cilia as Mechanotransducers in BoneR21AR054156 · NIAMS · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI JACOBS, CHRISTOPHER RAE · 2007 to 2008
$328k
NIAMS NIH HHS AR054156NIAMS NIH HHS AR059038NIAMS NIH HHS AR062177NIAMS NIH HHS R01 AR062177NIAMS NIH HHS R21 AR054156NIAMS NIH HHS T32 AR059038
6 · The paper itself

Abstract

Osteogenic lineage commitment is often evaluated by analyzing gene expression. However, many genes are transiently expressed during differentiation. The availability of genes for expression is influenced by epigenetic state, which affects the heterochromatin structure. DNA methylation, a form of epigenetic regulation, is stable and heritable. Therefore, analyzing methylation status may be less temporally dependent and more informative for evaluating lineage commitment. Here we analyzed the effect of mechanical stimulation on osteogenic differentiation by applying fluid shear stress for 24 hr to osteocytes and then applying the osteocyte-conditioned medium (CM) to progenitor cells. We analyzed gene expression and changes in DNA methylation after 24 hr of exposure to the CM using quantitative real-time polymerase chain reaction and bisulfite sequencing. With fluid shear stress stimulation, methylation decreased for both adipogenic and osteogenic markers, which typically increases availability of genes for expression. After only 24 hr of exposure to CM, we also observed increases in expression of later osteogenic markers that are typically observed to increase after seven days or more with biochemical induction. However, we observed a decrease or no change in early osteogenic markers and decreases in adipogenic gene expression. Treatment of a demethylating agent produced an increase in all genes. The results indicate that fluid shear stress stimulation rapidly promotes the availability of genes for expression, but also specifically increases gene expression of later osteogenic markers.

Indexed as

Epigenesis, GeneticMechanical PhenomenaAdipogenesisAnimalsBiomarkersBiomechanical PhenomenaCell Line, TumorCulture Media, ConditionedDNA MethylationGene Expression RegulationMesenchymal Stem CellsMiceOsteogenesisRNA, MessengerSequence Analysis, DNAStress, MechanicalBiomarkersCulture Media, ConditionedRNA, Messenger

Identifiers

PMID25581684
PMCPMC4321109
OpenAlexW2101784151

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.