Evidence map›Paper›PMID 25581579›Full record

ArticleHuman mutation2015

Heterozygous triplication of upstream regulatory sequences leads to dysregulation of matrix metalloproteinase 19 in patients with cavitary optic disc anomaly.

Ralph J Hazlewood, Benjamin R Roos, Frances Solivan-Timpe, Robert A Honkanen, Lee M Jampol, Stephen C Gieser, Kacie J Meyer, Robert F Mullins, Markus H Kuehn, Todd E Scheetz and 4 more

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Serous maculopathy in congenital cavitary optic disc anomaly: A case series.American journal of ophthalmology case reports · 2025
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Biochemical and Biological Attributes of Matrix Metalloproteinases.Progress in molecular biology and translational science · 2017
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Ralph J HazlewoodDepartment of Ophthalmology and Visual Sciences, Carver College of Medicine, University of Iowa, Iowa City, Iowa; Stephen A. Wynn Institute for Vision Research, University of Iowa, Iowa City, Iowa.
Benjamin R Roos
Frances Solivan-Timpe
Robert A Honkanen
Lee M Jampol
Stephen C Gieser
Kacie J Meyer
Robert F Mullins
Markus H Kuehn
Todd E Scheetz
Young H Kwon
Wallace L M Alward
Edwin M Stone
John H Fingert
University of Iowa · USNorthwestern University · USStony Brook University · USWheaton College - Illinois · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008629 · NIGMS · UNIVERSITY OF IOWA · PI EBERL, DANIEL F · 1997 to 2021
$4.1M
Genetics of Quantitative Traits Associated with GlaucomaR01EY018825 · NEI · UNIVERSITY OF IOWA · PI FINGERT, JOHN H · 2009 to 2013
$3.2M
Molecular Genetics of Norma Tension GlaucomaR01EY023512 · NEI · UNIVERSITY OF IOWA · PI FINGERT, JOHN H, MULLINS, ROBERT FOSTER · 2014 to 2017
$1.8M
Unfolded Protein Response in Glaucoma PathogenesisR01EY022044 · NEI · UNIVERSITY OF IOWA · PI KUEHN, MARKUS H. · 2012 to 2014
$1.1M
Matrix Metallopeptidase 19 (MMP19) and Optic Nerve DiseaseR21EY024621 · NEI · UNIVERSITY OF IOWA · PI FINGERT, JOHN H · 2014 to 2015
$411k
NEI NIH HHS R01 EY018825NEI NIH HHS R01EY018825NEI NIH HHS R01 EY022044NEI NIH HHS R01 EY023512NEI NIH HHS R01EY023512NEI NIH HHS R21 EY024621NEI NIH HHS R21 EY24621NIGMS NIH HHS T32 GM008629
6 · The paper itself

Abstract

Patients with a congenital optic nerve disease, cavitary optic disc anomaly (CODA), are born with profound excavation of the optic nerve resembling glaucoma. We previously mapped the gene that causes autosomal-dominant CODA in a large pedigree to a chromosome 12q locus. Using comparative genomic hybridization and quantitative PCR analysis of this pedigree, we report identifying a 6-Kbp heterozygous triplication upstream of the matrix metalloproteinase 19 (MMP19) gene, present in all 17 affected family members and no normal members. Moreover, the triplication was not detected in 78 control subjects or in the Database of Genomic Variants. We further detected the same 6-Kbp triplication in one of 24 unrelated CODA patients and in none of 172 glaucoma patients. Analysis with a Luciferase assay showed that the 6-Kbp sequence has transcription enhancer activity. A 773-bp fragment of the 6-Kbp DNA segment increased downstream gene expression eightfold, suggesting that triplication of this sequence may lead to dysregulation of the downstream gene, MMP19, in CODA patients. Lastly, immunohistochemical analysis of human donor eyes revealed strong expression of MMP19 in optic nerve head. These data strongly suggest that triplication of an enhancer may lead to overexpression of MMP19 in the optic nerve that causes CODA.

Indexed as

HeterozygoteRegulatory Sequences, Nucleic AcidChromosomes, Human, Pair 12Eye Diseases, HereditaryGlaucomaHumansMatrix Metalloproteinases, SecretedOptic DiskPedigreematrix metalloproteinase 19Matrix Metalloproteinases, Secretedcavitary optic disc anomalyCODAcolobomacopy-number variationglaucomaMMP19

Identifiers

PMID25581579
PMCPMC4591753
OpenAlexW2027983020

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.