Evidence map›Paper›PMID 25581554›Full record

ReviewThe FEBS journal2015

Does the pressure dependence of kinetic isotope effects report usefully on dynamics in enzyme H-transfer reactions?

Robin Hoeven, Derren J Heyes, Sam Hay, Nigel S Scrutton

Abstract readReview
In one paragraph

Review in The FEBS journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Robin HoevenManchester Institute of Biotechnology and Faculty of Life Sciences, The University of Manchester, UK.
Derren J HeyesManchester Institute of Biotechnology and Faculty of Life Sciences, The University of Manchester, UK.
Sam HayManchester Institute of Biotechnology and Faculty of Life Sciences, The University of Manchester, UK.
Nigel S ScruttonManchester Institute of Biotechnology and Faculty of Life Sciences, The University of Manchester, UK.

Funding

Biotechnology and Biological Sciences Research Council BB/H021523/1
6 · The paper itself

Abstract

The temperature dependence of kinetic isotope effects (KIEs) has emerged as the main experimental probe of enzymatic H-transfer by quantum tunnelling. Implicit in the interpretation is a presumed role for dynamic coupling of H-transfer chemistry to the protein environment, the so-called 'promoting motions/vibrations hypothesis'. This idea remains contentious, and others have questioned the importance and/or existence of promoting motions/vibrations. New experimental methods of addressing this problem are emerging, including use of mass-modulated enzymes and time-resolved spectroscopy. The pressure dependence of KIEs has been considered as a potential probe of quantum tunnelling reactions, because semi-classical KIEs, which are defined by differences in zero-point vibrational energy, are relatively insensitive to kbar changes in pressure. Reported combined pressure and temperature (p-T) dependence studies of H-transfer reactions are, however, limited. Here, we extend and review the available p-T studies that have utilized well-defined experimental systems in which quantum mechanical tunnelling is established. These include flavoproteins, quinoproteins, light-activated enzymes and chemical model systems. We show that there is no clear general trend between the p-T dependencies of the KIEs in these systems. Given the complex nature of p-T studies, we conclude that computational simulations using determined (e.g. X-ray) structures are also needed alongside experimental measurements of reaction rates/KIEs to guide the interpretation of p-T effects. In providing new insight into H-transfer/environmental coupling, combined approaches that unite both atomistic understanding with experimental rate measurements will require careful evaluation on a case-by-case basis. Although individually informative, we conclude that p-T studies do not provide the more generalized insight that has come from studies of the temperature dependence of KIEs.

Indexed as

Models, ChemicalComputer SimulationEnzymesFlavoproteinsHydrogenIsotopesKineticsModels, MolecularMolecular Dynamics SimulationOxidoreductases Acting on CH-CH Group DonorsOxidoreductases Acting on CH-NH Group DonorsPressureQuantum TheoryTemperaturearomatic amine dehydrogenaseEnzymesFlavoproteinsHydrogenIsotopesOxidoreductases Acting on CH-CH Group DonorsOxidoreductases Acting on CH-NH Group Donorsprotochlorophyllide reductasedynamicsflavoproteinhydrogen transferpressurequantum tunnelling

Identifiers

PMID25581554
PMCPMC4949571

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.