Evidence map›Paper›PMID 25580597›Full record

ArticleNature biotechnology2015

Genomic discovery of potent chromatin insulators for human gene therapy.

Mingdong Liu, Matthew T Maurano, Hao Wang, Heyuan Qi, Chao-Zhong Song, Patrick A Navas, David W Emery, John A Stamatoyannopoulos, George Stamatoyannopoulos

Abstract read
PubMed Publisher
In one paragraph

Article in Nature biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 130 citations in OpenAlex.

  1. Locus-Scale Massively Parallel Reporter Assays.bioRxiv : the preprint server for biology · 2026
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  9. Novel photoreceptor-specific promoters for gene therapy in mid- to late-stage retinal degeneration.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
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  17. DNA repair and anti-cancer mechanisms in the long-lived bowhead whale.bioRxiv : the preprint server for biology · 2024
    Article
  18. A Massively ParallelACS synthetic biology · 2024
    Article
  19. Article
  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Mingdong LiuDivision of Medical Genetics, University of Washington, Seattle, Washington, USA.
Matthew T MauranoDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Hao WangDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Heyuan Qi1] Division of Medical Genetics, University of Washington, Seattle, Washington, USA. [2] Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Chao-Zhong Song1] Division of Medical Genetics, University of Washington, Seattle, Washington, USA. [2] Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, Washington, USA.
Patrick A NavasDivision of Medical Genetics, University of Washington, Seattle, Washington, USA.
David W Emery1] Division of Medical Genetics, University of Washington, Seattle, Washington, USA. [2] Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, Washington, USA.
John A Stamatoyannopoulos1] Department of Genome Sciences, University of Washington, Seattle, Washington, USA. [2] Department of Medicine, University of Washington, Seattle, Washington, USA.
George Stamatoyannopoulos1] Division of Medical Genetics, University of Washington, Seattle, Washington, USA. [2] Department of Genome Sciences, University of Washington, Seattle, Washington, USA.
University of Washington Medical Center · USUniversity of Washington · US

Funding

VECTOR CONSTRUCTIONS FOR GENE THERAPY OF SICKLE CELL DISEASEP01HL053750 · NHLBI · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 1994 to 2014
$30.4M
A Comprehensive Catalog of Dnasel Hypersensitive SitesU54HG007010 · NHGRI · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, JOHN A · 2012 to 2016
$12.4M
Northwest Reference Epigenome Mapping CenterU01ES017156 · NIEHS · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, JOHN A · 2008 to 2014
$10.0M
UW/FHCRC TRAINING IN HEMOGLOBINPATHIES, GENOMICS AND PROTEOMICSR90HG004152 · NHGRI · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 2006 to 2010
$370k
Regulatory Genomics of Human NeurodevelopmentF31MH094073 · NIMH · UNIVERSITY OF WASHINGTON · PI MAURANO, MATTHEW THOMAS · 2012 to 2013
$48k
NHGRI NIH HHS R90 HG004152NHGRI NIH HHS U54 HG007010NHLBI NIH HHS P01 HL53750NIEHS NIH HHS U01 ES017156NIMH NIH HHS F31 MH 094073
6 · The paper itself

Abstract

Insertional mutagenesis and genotoxicity, which usually manifest as hematopoietic malignancy, represent major barriers to realizing the promise of gene therapy. Although insulator sequences that block transcriptional enhancers could mitigate or eliminate these risks, so far no human insulators with high functional potency have been identified. Here we describe a genomic approach for the identification of compact sequence elements that function as insulators. These elements are highly occupied by the insulator protein CTCF, are DNase I hypersensitive and represent only a small minority of the CTCF recognition sequences in the human genome. We show that the elements identified acted as potent enhancer blockers and substantially decreased the risk of tumor formation in a cancer-prone animal model. The elements are small, can be efficiently accommodated by viral vectors and have no detrimental effects on viral titers. The insulators we describe here are expected to increase the safety of gene therapy for genetic diseases.

Indexed as

Genetic TherapyBinding SitesCCCTC-Binding FactorChromatinComputational BiologyEnhancer Elements, GeneticGene Expression RegulationGenetic VectorsGenome, HumanGenomicsHumansInsulator ElementsRepressor ProteinsSequence Analysis, DNACCCTC-Binding FactorChromatinCTCF protein, humanRepressor Proteins

Identifiers

PMID25580597
OpenAlexW1975777043

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.