Evidence map›Paper›PMID 25580203›Full record

ArticleNano research2014

On-chip detection of a single nucleotide polymorphism without polymerase amplification.

Jinhee Han, Matthew Tan, Lakshmana Sudheendra, Robert H Weiss, Ian M Kennedy

Open access · greenAbstract read
In one paragraph

Article in Nano research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Jinhee HanDepartment of Mechanical and Aerospace Engineering, University of California, Davis, California 95616, USA.
Matthew TanDivision of Nephrology, Department of Internal Medicine, University of California, Davis, California 95616, USA.
Lakshmana SudheendraDepartment of Mechanical and Aerospace Engineering, University of California, Davis, California 95616, USA.
Robert H WeissDivision of Nephrology, Department of Internal Medicine, University of California, Davis, California 95616, USA ; Medical Service, Sacramento VA Medical Center, Sacramento, California, 95655, USA.
Ian M KennedyDepartment of Mechanical and Aerospace Engineering, University of California, Davis, California 95616, USA.
University of California, Davis · USUniversity of California System · USSacramento VA Medical Center · US

Funding

Workshop on Environmental Technology Transfer and EntrepreneurshipP42ES004699 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI HAMMOCK, BRUCE D · 1987 to 2021
$50.1M
Metabolomic discovery and validation of urinary biomarkers for kidney cancerR01CA135401 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI WEISS, ROBERT H. · 2009 to 2013
$1.5M
A Metabolomic Approach to Discovering Biomarkers for ADPKDR01DK082690 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI WEISS, ROBERT H. · 2009 to 2010
$696k
NCI NIH HHS R01 CA135401NIDDK NIH HHS R01 DK082690NIEHS NIH HHS P42 ES004699
6 · The paper itself

Abstract

A nanoparticle-assembled photonic crystal (PC) array was used to detect single nucleotide polymorphism (SNP). The assay platform with PC nanostructure enhanced the fluorescent signal from nanoparticle-hybridized DNA complexes due to phase matching of excitation and emission. Nanoparticles coupled with probe DNA were trapped into nanowells in an array by using an electrophoretic particle entrapment system. The PC/DNA assay platform was able to identify a 1 base pair (bp) difference in synthesized nucleotide sequences that mimicked the mutation seen in a feline model of human autosomal dominant polycystic kidney disease (PKD) with a sensitivity of 0.9 fg/mL (50 aM)-sensitivity, which corresponds to 30 oligos/array. The reliability of the PC/DNA assay platform to detect SNP in a real sample was demonstrated by using genomic DNA (gDNA) extracted from the urine and blood of two PKD

Indexed as

arrayDNAphotonic crystalpolycystic kidney diseasereal time polymerase chain reaction (PCR)single nucleotide polymorphisms

Identifiers

PMID25580203
PMCPMC4286159
OpenAlexW2119618236

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.