Evidence map›Paper›PMID 25579819›Full record

ArticleGenetics research2014

Genome-wide copy number scan identifies IRF6 involvement in Van der Woude syndrome in an Indian family.

Dinesh S Manjegowda, Manu Prasad, Avinash M Veerappa, Nallur B Ramachandra

Open access · bronzeAbstract read
In one paragraph

Article in Genetics research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 87% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Dinesh S ManjegowdaGenetics Unit, Department of Anatomy,Yenepoya Medical College,Mangalore-575018,Karnataka,India.
Manu PrasadCentre for Craniofacial Anomaly, Yenepoya Dental College and Hospital,Mangalore-575018,Karnataka,India.
Avinash M VeerappaGenetics and Genomics Lab, Department of Studies in Zoology,University of Mysore,Manasagangotri,Mysore-570006,Karnataka,India.
Nallur B RamachandraGenetics and Genomics Lab, Department of Studies in Zoology,University of Mysore,Manasagangotri,Mysore-570006,Karnataka,India.
University of Mysore · INNitte University · INYenepoya University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Summary Van der Woude syndrome (VWS) is an autosomal dominant developmental malformation presenting with bilateral lower lip pits related to cleft lip, cleft palate and other malformations. We performed a whole-genome copy number variations (CNVs) scan in an Indian family with members suffering from VWS using 2·6 million combined SNP and CNV markers. We found CNVs affecting IRF6, a known candidate gene for VWS, in all three cases, while none of the non-VWS members showed any CNVs in the IRF6 region. The duplications and deletions of the chromosomal critical region in 1q32-q41 confirm the involvement of CNVs in IRF6 in South Indian VWS patients. Molecular network analysis of these and other cleft lip/palate related module genes suggests that they are associated with cytokine-mediated signalling pathways and response to interferon-gamma mediated signalling pathways. This is a maiden study indicating the involvement of CNVs in IRF6 in causing VWS in the Indian population.

Indexed as

Chromosome AberrationsAbnormalities, MultipleChromosomes, Human, Pair 1Cleft LipCleft PalateCystsCytokinesGene DosageGenotypeHumansIndiaInterferon Regulatory FactorsLipPolymorphism, Single NucleotideSignal TransductionCytokinesInterferon Regulatory FactorsIRF6 protein, human

Identifiers

PMID25579819
PMCPMC7045075
OpenAlexW2151332654

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.