Evidence map›Paper›PMID 25578899›Full record

ArticleJournal of biomolecular NMR2015

Solid-state NMR of the Yersinia pestis outer membrane protein Ail in lipid bilayer nanodiscs sedimented by ultracentrifugation.

Yi Ding, L Miya Fujimoto, Yong Yao, Francesca M Marassi

Open access · greenAbstract read
In one paragraph

Article in Journal of biomolecular NMR, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Calcium and hydroxyapatite binding site of human vitronectin provides insights to abnormal deposit formation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Determination of virulence associated immunogenic proteins in some ofVeterinary research forum : an international quarterly journal · 2019
    Article
  5. New applications of solid-state NMR in structural biology.Emerging topics in life sciences · 2018
    Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. NMR studies of membrane proteins.Journal of biomolecular NMR · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yi DingSanford-Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, CA, 92037, USA.
L Miya Fujimoto
Yong Yao
Francesca M Marassi
Sanford Burnham Prebys Medical Discovery Institute · US

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ELENA B PASQUALE · 1985 to 2026
$107.2M
RESOURCE FOR SOLID STATE NMR OF PROTEINSP41EB002031 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2018
$16.3M
Host recognition by pathogenic yersiniaeR01GM100265 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI MARASSI, FRANCESCA M · 2012 to 2015
$1.7M
Membrane protein structure in lipido: computational developments.R01GM110658 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI MARASSI, FRANCESCA M · 2014 to 2015
$702k
NCI NIH HHS P30 CA030199NIBIB NIH HHS P41 EB002031NIGMS NIH HHS GM100265NIGMS NIH HHS R01 GM100265NIGMS NIH HHS R01 GM110658
6 · The paper itself

Abstract

Solid-state NMR studies of sedimented soluble proteins has been developed recently as an attractive approach for overcoming the size limitations of solution NMR spectroscopy while bypassing the need for sample crystallization or precipitation (Bertini et al. Proc Natl Acad Sci USA 108(26):10396-10399, 2011). Inspired by the potential benefits of this method, we have investigated the ability to sediment lipid bilayer nanodiscs reconstituted with a membrane protein. In this study, we show that nanodiscs containing the outer membrane protein Ail from Yersinia pestis can be sedimented for solid-state NMR structural studies, without the need for precipitation or lyophilization. Optimized preparations of Ail in phospholipid nanodiscs support both the structure and the fibronectin binding activity of the protein. The same sample can be used for solution NMR, solid-state NMR and activity assays, facilitating structure-activity correlation experiments across a wide range of timescales.

Indexed as

Bacterial Outer Membrane ProteinsFibronectinsLipid BilayersMicellesModels, MolecularNuclear Magnetic Resonance, BiomolecularPhospholipidsPhosphorylcholineProtein BindingProtein Structure, TertiaryStructure-Activity RelationshipUltracentrifugationVirulence FactorsYersinia pestisAil protein, Yersinia pestisBacterial Outer Membrane ProteinsFibronectinsLipid BilayersMicellesPhospholipidsPhosphorylcholineVirulence Factors

Identifiers

PMID25578899
PMCPMC4398618
OpenAlexW2078124054

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.