Evidence map›Paper›PMID 25578879›Full record

ArticleMolecular cell2015

PI(5)P regulates autophagosome biogenesis.

Mariella Vicinanza, Viktor I Korolchuk, Avraham Ashkenazi, Claudia Puri, Fiona M Menzies, Jonathan H Clarke, David C Rubinsztein

Open access · hybridAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 152 papers.

0numbers the graph read from it
0cells of the map it votes in
152citing papers in PubMed
22.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

152 citing papers in PubMed, 245 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Structural basis for high-affinity inhibitor binding to lipid kinases PIP4K2A and PIP4K2B.Acta crystallographica. Section D, Structural biology · 2026
    Article
  5. Article
  6. Subcellular Cartography of the Phosphoinositide Multiverse.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2026
    Review
  7. PIKfyve mediates the maturation of mycobacteria-containing vesicles.Frontiers in cellular and infection microbiology · 2026
    Article
  8. Review
  9. Review
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  12. Article
  13. Article
  14. Review
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  20. Review

92 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Mariella VicinanzaDepartment of Medical Genetics, Cambridge Institute for Medical Research, Wellcome/MRC Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Viktor I KorolchukDepartment of Medical Genetics, Cambridge Institute for Medical Research, Wellcome/MRC Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Avraham AshkenaziDepartment of Medical Genetics, Cambridge Institute for Medical Research, Wellcome/MRC Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Claudia PuriDepartment of Medical Genetics, Cambridge Institute for Medical Research, Wellcome/MRC Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Fiona M MenziesDepartment of Medical Genetics, Cambridge Institute for Medical Research, Wellcome/MRC Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Jonathan H ClarkeDepartment of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge CB2 1PD, UK.
David C RubinszteinDepartment of Medical Genetics, Cambridge Institute for Medical Research, Wellcome/MRC Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK. Electronic address: dcr1000@cam.ac.uk.
University of Cambridge · GB

Funding

Medical Research Council MC_PC_12012Wellcome Trust 095317Wellcome Trust 095317/Z/11/ZWellcome Trust 100140Wellcome Trust 100140/Z/12/Z
6 · The paper itself

Abstract

Phosphatidylinositol 3-phosphate (PI(3)P), the product of class III PI3K VPS34, recruits specific autophagic effectors, like WIPI2, during the initial steps of autophagosome biogenesis and thereby regulates canonical autophagy. However, mammalian cells can produce autophagosomes through enigmatic noncanonical VPS34-independent pathways. Here we show that PI(5)P can regulate autophagy via PI(3)P effectors and thereby identify a mechanistic explanation for forms of noncanonical autophagy. PI(5)P synthesis by the phosphatidylinositol 5-kinase PIKfyve was required for autophagosome biogenesis, and it increased levels of PI(5)P, stimulated autophagy, and reduced the levels of autophagic substrates. Inactivation of VPS34 impaired recruitment of WIPI2 and DFCP1 to autophagic precursors, reduced ATG5-ATG12 conjugation, and compromised autophagosome formation. However, these phenotypes were rescued by PI(5)P in VPS34-inactivated cells. These findings provide a mechanistic framework for alternative VPS34-independent autophagy-initiating pathways, like glucose starvation, and unravel a cytoplasmic function for PI(5)P, which previously has been linked predominantly to nuclear roles.

Indexed as

AutophagyAnimalsAutophagy-Related ProteinsCarrier ProteinsHeLa CellsHumansHypoxia-Inducible Factor-Proline DioxygenasesMiceMicrotubule-Associated ProteinsPhagosomesPhosphatidylinositol 3-KinasesPhosphatidylinositol PhosphatesATG16L1 protein, humanAutophagy-Related ProteinsCarrier ProteinsEGLN3 protein, humanHypoxia-Inducible Factor-Proline DioxygenasesMAP1LC3A protein, humanMicrotubule-Associated ProteinsPhosphatidylinositol 3-Kinasesphosphatidylinositol 3-phosphatephosphatidylinositol 5-phosphatePhosphatidylinositol PhosphatesPIKFYVE protein, human

Identifiers

PMID25578879
PMCPMC4306530
OpenAlexW2027474840

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.