Evidence map›Paper›PMID 25578268›Full record

ReviewMolecular plant2015

The application of synthetic biology to elucidation of plant mono-, sesqui-, and diterpenoid metabolism.

Naoki Kitaoka, Xuan Lu, Bing Yang, Reuben J Peters

Abstract readReview
In one paragraph

Review in Molecular plant, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Sesquiterpenoids fromMolecules (Basel, Switzerland) · 2026
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Mining of theJournal of natural products · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. The foxtail millet (Setaria italica) terpene synthase gene family.The Plant journal : for cell and molecular biology · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Naoki KitaokaDepartment of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Xuan LuDepartment of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Bing YangDepartment of Genetics, Developmental & Cell Biology, Iowa State University, Ames, IA 50011, USA.
Reuben J PetersDepartment of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50011, USA. Electronic address: rjpeters@iastate.edu.

Funding

Enzymatic formation of the hydrocarbon skeletons underlying diterpenoid diversityR01GM076324 · NIGMS · IOWA STATE UNIVERSITY · PI PETERS, REUBEN JOHN · 2006 to 2019
$3.4M
NIGMS NIH HHS GM076324NIGMS NIH HHS R01 GM076324
6 · The paper itself

Abstract

Plants synthesize a huge variety of terpenoid natural products, including photosynthetic pigments, signaling molecules, and defensive substances. These are often produced as complex mixtures, presumably shaped by selective pressure over evolutionary timescales, some of which have been found to have pharmaceutical and other industrial uses. Elucidation of the relevant biosynthetic pathways can provide increased access (e.g., via molecular breeding or metabolic engineering) and enable reverse genetic approaches toward understanding the physiological role of these natural products in plants as well. While such information can be obtained via a variety of approaches, this review describes the emerging use of synthetic biology to recombinantly reconstitute plant terpenoid biosynthetic pathways in heterologous host organisms as a functional discovery tool, with a particular focus on incorporation of the historically problematic cytochrome P450 mono-oxygenases. Also falling under the synthetic biology rubric and discussed here is the nascent application of genome-editing tools to probe physiological function.

Indexed as

DiterpenesMonoterpenesPlantsSesquiterpenesSynthetic BiologyDiterpenesMonoterpenesSesquiterpenescytochromes P450metabolic engineeringreverse geneticsterpene synthase

Identifiers

PMID25578268
PMCPMC5120878

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.