Evidence map›Paper›PMID 25576899›Full record

ArticleHuman molecular genetics2015

Characterization of the mutational landscape of anaplastic thyroid cancer via whole-exome sequencing.

John W Kunstman, C Christofer Juhlin, Gerald Goh, Taylor C Brown, Adam Stenman, James M Healy, Jill C Rubinstein, Murim Choi, Nimrod Kiss, Carol Nelson-Williams and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 213 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
213citing papers in PubMed, 4 pooled it
23.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

213 citing papers in PubMed, 4 syntheses or guidelines pooled it, 357 citations in OpenAlex.

  1. 2021 American Thyroid Association Guidelines for Management of Patients with Anaplastic Thyroid Cancer.Thyroid : official journal of the American Thyroid Association · 2021
    Guideline
  2. Genomic Heterogeneity and Exceptional Response to Dual Pathway Inhibition in Anaplastic Thyroid Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2017
    Pooled it
  3. Pooled it
  4. Pooled it
  5. PD-1 Blockade in Anaplastic Thyroid Carcinoma.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2020
    Trial
  6. Dabrafenib and Trametinib Treatment in Patients With Locally Advanced or Metastatic BRAF V600-Mutant Anaplastic Thyroid Cancer.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2018
    Trial
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153 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 2 countries.

John W KunstmanYale Endocrine Neoplasia Laboratory, Department of Surgery.
C Christofer JuhlinYale Endocrine Neoplasia Laboratory, Department of Oncology-Pathology and.
Gerald GohDepartment of Genetics, Howard Hughes Medical Institute and.
Taylor C BrownYale Endocrine Neoplasia Laboratory, Department of Surgery.
Adam StenmanDepartment of Oncology-Pathology and.
James M HealyYale Endocrine Neoplasia Laboratory, Department of Surgery.
Jill C RubinsteinYale Endocrine Neoplasia Laboratory, Department of Surgery.
Murim ChoiDepartment of Genetics, Howard Hughes Medical Institute and.
Nimrod KissDepartment of Oncology-Pathology and.
Carol Nelson-WilliamsDepartment of Genetics, Howard Hughes Medical Institute and.
Shrikant ManeDepartment of Genetics.
David L RimmDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.
Manju L PrasadDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.
Anders HöögDepartment of Oncology-Pathology and.
Jan ZedeniusDepartment of Molecular Medicine and Surgery, Karolinska Institutet, Karolinska University Hospital CCK, SE-171 76 Stockholm, Sweden.
Catharina LarssonDepartment of Oncology-Pathology and.
Reju KorahYale Endocrine Neoplasia Laboratory, Department of Surgery.
Richard P LiftonDepartment of Genetics, Howard Hughes Medical Institute and.
Tobias CarlingYale Endocrine Neoplasia Laboratory, Department of Surgery, tobias.carling@yale.edu.
Howard Hughes Medical Institute · USYale University · USKarolinska University Hospital · SE

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR000142
6 · The paper itself

Abstract

Anaplastic thyroid carcinoma (ATC) is a frequently lethal malignancy that is often unresponsive to available therapeutic strategies. The tumorigenesis of ATC and its relationship to the widely prevalent well-differentiated thyroid carcinomas are unclear. We have analyzed 22 cases of ATC as well as 4 established ATC cell lines using whole-exome sequencing. A total of 2674 somatic mutations (121/sample) were detected. Ontology analysis revealed that the majority of variants aggregated in the MAPK, ErbB and RAS signaling pathways. Mutations in genes related to malignancy not previously associated with thyroid tumorigenesis were observed, including mTOR, NF1, NF2, MLH1, MLH3, MSH5, MSH6, ERBB2, EIF1AX and USH2A; some of which were recurrent and were investigated in 24 additional ATC cases and 8 ATC cell lines. Somatic mutations in established thyroid cancer genes were detected in 14 of 22 (64%) tumors and included recurrent mutations in BRAF, TP53 and RAS-family genes (6 cases each), as well as PIK3CA (2 cases) and single cases of CDKN1B, CDKN2C, CTNNB1 and RET mutations. BRAF V600E and RAS mutations were mutually exclusive; all ATC cell lines exhibited a combination of mutations in either BRAF and TP53 or NRAS and TP53. A hypermutator phenotype in two cases with >8 times higher mutational burden than the remaining mean was identified; both cases harbored unique somatic mutations in MLH mismatch-repair genes. This first comprehensive exome-wide analysis of the mutational landscape of ATC identifies novel genes potentially associated with ATC tumorigenesis, some of which may be targets for future therapeutic intervention.

Indexed as

ExomeMutationAgedAged, 80 and overCell Line, TumorClass I Phosphatidylinositol 3-KinasesFemaleHumansMaleMiddle AgedPhosphatidylinositol 3-KinasesProto-Oncogene Proteins B-rafThyroid Carcinoma, AnaplasticThyroid NeoplasmsTumor Suppressor Protein p53Class I Phosphatidylinositol 3-KinasesPhosphatidylinositol 3-KinasesPIK3CA protein, humanProto-Oncogene Proteins B-rafTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID25576899
PMCPMC4380073
OpenAlexW1971381075

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.