Evidence map›Paper›PMID 25576609›Full record

ArticleApplied and environmental microbiology2015

Genetic determinants of reutericyclin biosynthesis in Lactobacillus reuteri.

Xiaoxi B Lin, Christopher T Lohans, Rebbeca Duar, Jinshui Zheng, John C Vederas, Jens Walter, Michael Gänzle

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 71 citations in OpenAlex.

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  15. Microbial metabolites: cause or consequence in gastrointestinal disease?American journal of physiology. Gastrointestinal and liver physiology · 2022
    Review
  16. Journal of bacteriology · 2022
    Article
  17. Review
  18. Article
  19. Small molecule natural products in human nasal/oral microbiota.Journal of industrial microbiology & biotechnology · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

Xiaoxi B LinDepartment of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada.
Christopher T LohansDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Rebbeca DuarDepartment of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada Department of Food Science and Technology, University of Nebraska, Lincoln, Nebraska, USA.
Jinshui ZhengState Key Lab of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, People's Republic of China.
John C VederasDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Jens WalterDepartment of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada Department of Food Science and Technology, University of Nebraska, Lincoln, Nebraska, USA.
Michael GänzleDepartment of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada School of Food and Pharmaceutical Engineering, Hubei University of Technology, Wuhan, People's Republic of China mgaenzle@ualberta.ca.
University of Alberta · CAHuazhong Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reutericyclin is a unique antimicrobial tetramic acid produced by some strains of Lactobacillus reuteri. This study aimed to identify the genetic determinants of reutericyclin biosynthesis. Comparisons of the genomes of reutericyclin-producing L. reuteri strains with those of non-reutericyclin-producing strains identified a genomic island of 14 open reading frames (ORFs) including genes coding for a nonribosomal peptide synthetase (NRPS), a polyketide synthase (PKS), homologues of PhlA, PhlB, and PhlC, and putative transport and regulatory proteins. The protein encoded by rtcN is composed of a condensation domain, an adenylation domain likely specific for d-leucine, and a thiolation domain. rtcK codes for a PKS that is composed of a ketosynthase domain, an acyl-carrier protein domain, and a thioesterase domain. The products of rtcA, rtcB, and rtcC are homologous to the diacetylphloroglucinol-biosynthetic proteins PhlABC and may acetylate the tetramic acid moiety produced by RtcN and RtcK, forming reutericyclin. Deletion of rtcN or rtcABC in L. reuteri TMW1.656 abrogated reutericyclin production but did not affect resistance to reutericyclin. Genes coding for transport and regulatory proteins could be deleted only in the reutericyclin-negative L. reuteri strain TMW1.656ΔrtcN, and these deletions eliminated reutericyclin resistance. The genomic analyses suggest that the reutericyclin genomic island was horizontally acquired from an unknown source during a unique event. The combination of PhlABC homologues with both an NRPS and a PKS has also been identified in the lactic acid bacteria Streptococcus mutans and Lactobacillus plantarum, suggesting that the genes in these organisms and those in L. reuteri share an evolutionary origin.

Indexed as

Biosynthetic PathwaysAnti-Bacterial AgentsDNA, BacterialGene DeletionGenomic IslandsLactiplantibacillus plantarumLimosilactobacillus reuteriMolecular Sequence DataOpen Reading FramesSequence Analysis, DNASequence Homology, Amino AcidStreptococcus mutansTenuazonic AcidAnti-Bacterial AgentsDNA, BacterialreutericyclinTenuazonic Acid

Identifiers

PMID25576609
PMCPMC4345372
OpenAlexW1984545633

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.