Evidence map›Paper›PMID 25575569›Full record

ArticleGastroenterology2015

Mutations in RAD21 disrupt regulation of APOB in patients with chronic intestinal pseudo-obstruction.

Elena Bonora, Francesca Bianco, Lina Cordeddu, Michael Bamshad, Ludmila Francescatto, Dustin Dowless, Vincenzo Stanghellini, Rosanna F Cogliandro, Greger Lindberg, Zeynel Mungan and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in Gastroenterology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 81 citations in OpenAlex.

  1. Phenotypic Spectrum in Three Romanian Patients with 8q23-q24 Deletions.International journal of molecular sciences · 2026
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  17. Frontiers in cell and developmental biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 8 institutions in 4 countries.

Elena BonoraDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Francesca BiancoDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Lina CordedduKarolinska Institutet, Stockholm, Sweden.
Michael BamshadUniversity of Washington Center for Mendelian Genomics, Seattle, Washington.
Ludmila FrancescattoCenter for Human Disease Modeling, Duke University, Durham, North Carolina.
Dustin DowlessCenter for Human Disease Modeling, Duke University, Durham, North Carolina.
Vincenzo StanghelliniDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Rosanna F CogliandroDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Greger LindbergKarolinska Institutet, Stockholm, Sweden.
Zeynel MunganKoc University of Istanbul, Istanbul, Turkey.
Kivanc CefleIstanbul Medical Faculty, Department of Internal Medicine, Division of Medical Genetics, Turkey.
Tayfun OzcelikBilkent University, Bilkent, Ankara, Turkey.
Sukru PalanduzIstanbul Medical Faculty, Department of Internal Medicine, Division of Medical Genetics, Turkey.
Sukru OzturkIstanbul Medical Faculty, Department of Internal Medicine, Division of Medical Genetics, Turkey.
Asuman GedikbasiIstanbul Medical Faculty, Department of Internal Medicine, Division of Medical Genetics, Turkey.
Alessandra GoriDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Tommaso PippucciDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Claudio GrazianoDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Umberto VoltaDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Giacomo CaioDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Giovanni BarbaraDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Mauro D'AmatoKarolinska Institutet, Stockholm, Sweden.
Marco SeriDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy.
Nicholas KatsanisCenter for Human Disease Modeling, Duke University, Durham, North Carolina.
Giovanni RomeoDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy. Electronic address: egf.giovanni.romeo@gmail.com.
Roberto De GiorgioDepartment of Medical and Surgical Sciences, University of Bologna, and St. Orsola-Malpighi Hospital, Bologna, Italy; Centro Unificato di Ricerca Biomedica Applicata, Bologna, Italy. Electronic address: roberto.degiorgio@unibo.it.
Policlinico S.Orsola-Malpighi · ITIstanbul University · TRDuke University · USKarolinska Institutet · SEUniversity of Bologna · ITBilkent University · TRKoç University · TRWashington Center · US

Funding

UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Research Project 3P50DK096415 · NIDDK · DUKE UNIVERSITY · PI HAUSER, MICHAEL A · 2012 to 2016
$4.2M
NHGRI NIH HHS 1U54HG006493NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493NIDDK NIH HHS P50 DK096415NIDDK NIH HHS P50DK096415
6 · The paper itself

Abstract

BACKGROUND &

aimsChronic intestinal pseudo-obstruction (CIPO) is characterized by severe intestinal dysmotility that mimics a mechanical subocclusion with no evidence of gut obstruction. We searched for genetic variants associated with CIPO to increase our understanding of its pathogenesis and to identify potential biomarkers.

methodsWe performed whole-exome sequencing of genomic DNA from patients with familial CIPO syndrome. Blood and lymphoblastoid cells were collected from patients and controls (individuals without CIPO); levels of messenger RNA (mRNA) and proteins were analyzed by quantitative reverse-transcription polymerase chain reaction, immunoblot, and mobility shift assays. Complementary DNAs were transfected into HEK293 cells. Expression of rad21 was suppressed in zebrafish embryos using a splice-blocking morpholino (rad21a). Gut tissues were collected and analyzed.

resultsWe identified a homozygous mutation (p.622, encodes Ala>Thr) in RAD21 in patients from a consanguineous family with CIPO. Expression of RUNX1, a target of RAD21, was reduced in cells from patients with CIPO compared with controls. In zebrafish, suppression of rad21a reduced expression of runx1; this phenotype was corrected by injection of human RAD21 mRNA, but not with the mRNA from the mutated p.622 allele. rad21a Morpholino zebrafish had delayed intestinal transit and greatly reduced numbers of enteric neurons, similar to patients with CIPO. This defect was greater in zebrafish with suppressed expression of ret and rad21, indicating their interaction in the regulation of gut neurogenesis. The promoter region of APOB bound RAD21 but not RAD21 p.622 Ala>Thr; expression of wild-type RAD21 in HEK293 cells repressed expression of APOB, compared with control vector. The gut-specific isoform of APOB (APOB48) is overexpressed in sera from patients with CIPO who carry the RAD21 mutation. APOB48 also is overexpressed in sporadic CIPO in sera and gut biopsy specimens.

conclusionsSome patients with CIPO carry mutations in RAD21 that disrupt the ability of its product to regulate genes such as RUNX1 and APOB. Reduced expression of rad21 in zebrafish, and dysregulation of these target genes, disrupts intestinal transit and the development of enteric neurons.

Indexed as

AdultAnimalsApolipoprotein B-100Case-Control StudiesCell Cycle ProteinsChronic DiseaseCore Binding Factor Alpha 2 SubunitDNA-Binding ProteinsEnteric Nervous SystemFemaleGastrointestinal MotilityGene Expression ProfilingGene Knockdown TechniquesHEK293 CellsHumansIntestinal Pseudo-ObstructionAPOB protein, humanApolipoprotein B-100Cell Cycle ProteinsCore Binding Factor Alpha 2 SubunitDNA-Binding ProteinsNuclear ProteinsPhosphoproteinsrad21a protein, zebrafishRAD21 protein, humanRNA, MessengerRUNX1 protein, humanZebrafish ProteinsAnimal ModelGenetic AnalysisIntestinal MotilitySporadic and Familial Chronic Intestinal Pseudo-obstruction

Identifiers

PMID25575569
PMCPMC4375026
OpenAlexW2040130376

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