Evidence map›Paper›PMID 25574123›Full record

ArticleEvolutionary bioinformatics online2014

Computational analysis reveals a successive adaptation of multiple inositol polyphosphate phosphatase 1 in higher organisms through evolution.

Surya P Kilaparty, Awantika Singh, William H Baltosser, Nawab Ali

Open access · goldAbstract read
In one paragraph

Article in Evolutionary bioinformatics online, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.5field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  6. Stable Isotopomers ofACS central science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Surya P KilapartyDepartment of Biology, University of Arkansas at Little Rock, Arkansas, USA.
Awantika SinghUAMS/UALR Joint Bioinformatics Program, University of Arkansas at Little Rock, Arkansas, USA.
William H BaltosserDepartment of Biology, University of Arkansas at Little Rock, Arkansas, USA.
Nawab AliDepartment of Biology, University of Arkansas at Little Rock, Arkansas, USA.
University of Arkansas at Little Rock · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multiple inositol polyphosphate phosphatase 1 (Minpp1) in higher organisms dephosphorylates InsP6, the most abundant inositol phosphate. It also dephosphorylates less phosphorylated InsP5 and InsP4 and more phosphorylated InsP7 or InsP8. Minpp1 is classified as a member of the histidine acid phosphatase super family of proteins with functional resemblance to phytases found in lower organisms. This study took a bioinformatics approach to explore the extent of evolutionary diversification in Minpp1 structure and function in order to understand its physiological relevance in higher organisms. The human Minpp1 amino acid (AA) sequence was BLAST searched against available national protein databases. Phylogenetic analysis revealed that Minpp1 was widely distributed from lower to higher organisms. Further, we have identified that there exist four isoforms of Minpp1. Multiple computational tools were used to identify key functional motifs and their conservation among various species. Analyses showed that certain motifs predominant in higher organisms were absent in lower organisms. Variation in AA sequences within motifs was also analyzed. We found that there is diversification of key motifs and thus their functions present in Minpp1 from lower organisms to higher organisms. Another interesting result of this analysis was the presence of a glucose-1-phosphate interaction site in Minpp1; the functional significance of which has yet to be determined experimentally. The overall findings of our study point to an evolutionary adaptability of Minpp1 functions from lower to higher life forms.

Indexed as

bioinformaticscomputationalevolutionary significanceevolution of proteinsHiPERinositol (1,3,4,5)-tetrakisphosphate 3-phosphataseinositol phosphatesMinpp1Minpp2Mippmultiple inositol polyphosphate phosphatasephytasesprotein domainsprotein motifsprotein structure prediction

Identifiers

PMID25574123
PMCPMC4275298
OpenAlexW2039412753

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.