Evidence map›Paper›PMID 25574027›Full record

ArticleHuman molecular genetics2015

Htt CAG repeat expansion confers pleiotropic gains of mutant huntingtin function in chromatin regulation.

Marta Biagioli, Francesco Ferrari, Eric M Mendenhall, Yijing Zhang, Serkan Erdin, Ravi Vijayvargia, Sonia M Vallabh, Nicole Solomos, Poornima Manavalan, Ashok Ragavendran and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
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  5. Article
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  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Epigenetic regulation in Huntington's disease.Neurochemistry international · 2021
    Review
  13. Histone Methylation Regulation in Neurodegenerative Disorders.International journal of molecular sciences · 2021
    Review
  14. Article
  15. Review
  16. Analysis of LINE1 Retrotransposons in Huntington's Disease.Frontiers in cellular neuroscience · 2021
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Marta BiagioliCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA, Department of Neurology, Harvard Medical School, Boston, MA 02114, USA.
Francesco FerrariCenter for Biomedical Informatics, Boston, MA 02114, USA.
Eric M MendenhallUniversity of Alabama in Huntsville, Huntsville, AL 35805, USA.
Yijing ZhangCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA.
Serkan ErdinCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA.
Ravi VijayvargiaCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA, Department of Neurology, Harvard Medical School, Boston, MA 02114, USA.
Sonia M VallabhCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA.
Nicole SolomosCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA.
Poornima ManavalanCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA.
Ashok RagavendranCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA.
Fatih OzsolakRaNA Therapeutics, 790 Memorial Drive, Cambridge, MA 02139, USA.
Jong Min LeeCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA, Department of Neurology, Harvard Medical School, Boston, MA 02114, USA.
Michael E TalkowskiCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.
James F GusellaCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA, Department of Genetics, Harvard Medical School, Boston, MA 02115, USA and.
Marcy E MacdonaldCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA, Department of Neurology, Harvard Medical School, Boston, MA 02114, USA, Department of Genetics, Harvard Medical School, Boston, MA 02115, USA and.
Peter J ParkCenter for Biomedical Informatics, Boston, MA 02114, USA Division of Genetics, Brigham and Women's Hospital, Boston, MA 02115, USA.
Ihn Sik SeongCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA, Department of Neurology, Harvard Medical School, Boston, MA 02114, USA, iseong@mgh.harvard.edu.
Massachusetts General Hospital · USHarvard University · USBrigham and Women's Hospital · USCenter for Human Genetics · USRaNA Therapeutics (United States) · USUniversity of Alabama in Huntsville · US

Funding

TOXICITY AND SPECIFICITY COMPONENTS OF HD PATHOGENESISP50NS016367 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI GUSELLA, JAMES F · 1996 to 2010
$15.8M
Disease-Modifying Genes in Huntington's DiseaseR01NS091161 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI JAMES F GUSELLA · 2015 to 2026
$7.2M
GENETIC MODEL OF HUNTINGTONS DISEASER01NS032765 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI MACDONALD, MARCY · 1994 to 2011
$3.7M
Effects of PolyQ Expansion on Full-length Huntingtin Protein in HDR01NS079651 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI SEONG, IHN SIK · 2012 to 2015
$1.5M
NINDS NIH HHS P50 NS016367NINDS NIH HHS R01 NS079651NINDS NIH HHS R01 NS091161NINDS NIH HHS R01NS32765
6 · The paper itself

Abstract

The CAG repeat expansion in the Huntington's disease gene HTT extends a polyglutamine tract in mutant huntingtin that enhances its ability to facilitate polycomb repressive complex 2 (PRC2). To gain insight into this dominant gain of function, we mapped histone modifications genome-wide across an isogenic panel of mouse embryonic stem cell (ESC) and neuronal progenitor cell (NPC) lines, comparing the effects of Htt null and different size Htt CAG mutations. We found that Htt is required in ESC for the proper deposition of histone H3K27me3 at a subset of 'bivalent' loci but in NPC it is needed at 'bivalent' loci for both the proper maintenance and the appropriate removal of this mark. In contrast, Htt CAG size, though changing histone H3K27me3, is prominently associated with altered histone H3K4me3 at 'active' loci. The sets of ESC and NPC genes with altered histone marks delineated by the lack of huntingtin or the presence of mutant huntingtin, though distinct, are enriched in similar pathways with apoptosis specifically highlighted for the CAG mutation. Thus, the manner by which huntingtin function facilitates PRC2 may afford mutant huntingtin with multiple opportunities to impinge upon the broader machinery that orchestrates developmentally appropriate chromatin status.

Indexed as

MutationTrinucleotide Repeat ExpansionAllelesAnimalsChromatinChromatin Assembly and DisassemblyChromatin ImmunoprecipitationCluster AnalysisEmbryonic Stem CellsGene DeletionGene Expression RegulationGenome-Wide Association StudyGenotypeHigh-Throughput Nucleotide SequencingHistonesHuntingtin ProteinChromatinHistonesHtt protein, mouseHuntingtin ProteinNerve Tissue ProteinsNuclear ProteinsPolycomb Repressive Complex 2

Identifiers

PMID25574027
PMCPMC4383859
OpenAlexW2136427957

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.