Evidence map›Paper›PMID 25574022›Full record

ArticleScience (New York, N.Y.)2015

Gut microbiota. Antimicrobial peptide resistance mediates resilience of prominent gut commensals during inflammation.

T W Cullen, W B Schofield, N A Barry, E E Putnam, E A Rundell, M S Trent, P H Degnan, C J Booth, H Yu, A L Goodman

Open access · bronzeAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 233 papers.

0numbers the graph read from it
0cells of the map it votes in
233citing papers in PubMed
22.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

233 citing papers in PubMed, 390 citations in OpenAlex.

  1. Trial
  2. Artificial intelligence catalyzes antimicrobial peptide design.Synthetic and systems biotechnology · 2027
    Review
  3. Review
  4. A Novel Cationic Antimicrobial Peptide ScymidgutinProbiotics and antimicrobial proteins · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. The Safety ofViruses · 2026
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review

173 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

T W CullenDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06520, USA. Microbial Sciences Institute, Yale University School of Medicine, New Haven, CT 06520, USA.
W B SchofieldDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06520, USA. Microbial Sciences Institute, Yale University School of Medicine, New Haven, CT 06520, USA.
N A BarryDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06520, USA. Microbial Sciences Institute, Yale University School of Medicine, New Haven, CT 06520, USA.
E E PutnamDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06520, USA. Microbial Sciences Institute, Yale University School of Medicine, New Haven, CT 06520, USA.
E A RundellDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06520, USA.
M S TrentDepartment of Molecular Biosciences and Institute of Cell and Molecular Biology, University of Texas, Austin, TX 78712, USA.
P H DegnanDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
C J BoothSection of Comparative Medicine, Yale University School of Medicine, New Haven, CT 06520, USA.
H YuCancer Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI 96813, USA.
A L GoodmanDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06520, USA. Microbial Sciences Institute, Yale University School of Medicine, New Haven, CT 06520, USA. andrew.goodman@yale.edu.
Yale University · USUniversity of Hawaiʻi at Mānoa · USUniversity of Illinois Urbana-Champaign · US

Funding

Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
PREDOCTORAL TRAINING PROGRAM IN MICROBIAL PATHOGENESIST32AI007640 · NIAID · YALE UNIVERSITY · PI GOODMAN, ANDREW L · 2000 to 2022
$4.3M
MODIFICATION OF HELICOBACTER PYLORI LIPOPOLYSACCHARIDESR01AI064184 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI TRENT, MICHAEL STEPHEN · 2006 to 2015
$3.4M
The Outer Surface of Vibrio CholeraeR01AI076322 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI TRENT, MICHAEL STEPHEN · 2008 to 2017
$3.2M
Defining the contribution of interpersonal microbial variation to drug metabolismDP2GM105456 · NIGMS · YALE UNIVERSITY · PI GOODMAN, ANDREW L · 2012 to 2017
$3.0M
Molecular recognition of vitamin B12 and related compounds in human gut microbialR01GM103574 · NIGMS · YALE UNIVERSITY · PI GOODMAN, ANDREW L · 2013 to 2016
$1.2M
Corrinoid Response of the Human Gut MicrobiotaK01DK089121 · NIDDK · YALE UNIVERSITY · PI GOODMAN, ANDREW L · 2010 to 2014
$597k
Rethinking the barrier: How a Gram-negative bacterium alters its surface to become multidrug resistantR21AI119879 · NIAID · UNIVERSITY OF GEORGIA · PI TRENT, MICHAEL STEPHEN · 2015 to 2016
$413k
The Outer Surface of Vibrio choleraeR56AI076322 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI TRENT, MICHAEL STEPHEN · 2013 to 2013
$384k
NCATS NIH HHS UL1 TR000142NIAID NIH HHS AI064184NIAID NIH HHS AI76322NIAID NIH HHS R01 AI064184NIAID NIH HHS R01 AI076322NIAID NIH HHS R21 AI119879NIAID NIH HHS R56 AI076322NIAID NIH HHS T32 AI007640NIDDK NIH HHS DK089121NIDDK NIH HHS K01 DK089121NIGMS NIH HHS DP2 GM105456NIGMS NIH HHS GM103574NIGMS NIH HHS GM105456NIGMS NIH HHS R01 GM103574
6 · The paper itself

Abstract

Resilience to host inflammation and other perturbations is a fundamental property of gut microbial communities, yet the underlying mechanisms are not well understood. We have found that human gut microbes from all dominant phyla are resistant to high levels of inflammation-associated antimicrobial peptides (AMPs) and have identified a mechanism for lipopolysaccharide (LPS) modification in the phylum Bacteroidetes that increases AMP resistance by four orders of magnitude. Bacteroides thetaiotaomicron mutants that fail to remove a single phosphate group from their LPS were displaced from the microbiota during inflammation triggered by pathogen infection. These findings establish a mechanism that determines the stability of prominent members of a healthy microbiota during perturbation.

Indexed as

AnimalsAntimicrobial Cationic PeptidesBacteroidesColitisDrug Resistance, BacterialEscherichia coliGastrointestinal TractGerm-Free LifeHumansLipid AMiceMicrobiotaPhosphoric Monoester HydrolasesPolymyxin BSymbiosisAntimicrobial Cationic PeptidesLipid Alipid A 4'-phosphatasePhosphoric Monoester HydrolasesPolymyxin B

Identifiers

PMID25574022
PMCPMC4388331
OpenAlexW2132662146

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.