Evidence map›Paper›PMID 25573989›Full record

ArticleBlood2015

shRNA library screening identifies nucleocytoplasmic transport as a mediator of BCR-ABL1 kinase-independent resistance.

Jamshid S Khorashad, Anna M Eiring, Clinton C Mason, Kevin C Gantz, Amber D Bowler, Hannah M Redwine, Fan Yu, Ira L Kraft, Anthony D Pomicter, Kimberly R Reynolds and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 44 citations in OpenAlex.

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  18. Nuclear-Cytoplasmic Transport Is a Therapeutic Target in Myelofibrosis.Clinical cancer research : an official journal of the American Association for Cancer Research · 2019
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 2 countries.

Jamshid S KhorashadHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Anna M EiringHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Clinton C MasonHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Kevin C GantzHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Amber D BowlerHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Hannah M RedwineHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Fan YuHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT; Beijing Tsinghua Chang Gung Hospital, Tsinghua University, Beijing, China;
Ira L KraftHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Anthony D PomicterHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Kimberly R ReynoldsHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Anthony J IovinoHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Matthew S ZabriskieHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
William L HeatonHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Srinivas K TantravahiHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT; Division of Hematology and Hematologic Malignancies, The University of Utah, Salt Lake City, UT;
Michael KauffmanKaryopharm Therapeutics, Natick, MA; and.
Sharon ShachamKaryopharm Therapeutics, Natick, MA; and.
Alex ChenchikCellecta, Mountain View, CA.
Kyle BonneauCellecta, Mountain View, CA.
Katharine S UllmanHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT;
Thomas O'HareHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT; Division of Hematology and Hematologic Malignancies, The University of Utah, Salt Lake City, UT;
Michael W DeiningerHuntsman Cancer Institute, The University of Utah, Salt Lake City, UT; Division of Hematology and Hematologic Malignancies, The University of Utah, Salt Lake City, UT;
Huntsman Cancer Institute · USUniversity of Utah · USCellecta (United States) · USKaryopharm Therapeutics (United States) · US

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI KATHARINE S ULLMAN · 1986 to 2026
$72.6M
TOLERANCE INDUCTION BY MEGADOSE STEM CELL TRANSPLANTS IN CML--GVHD AND GVLP01CA049639 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SHPALL, ELIZABETH J · 1990 to 2014
$41.8M
MULTIDISCIPLINARY CANCER RESEARCH TRAINING PROGRAMT32CA093247 · NCI · UNIVERSITY OF UTAH · PI AYER, DONALD E · 2002 to 2011
$5.2M
Mechanisms of resistance to ponatinib therapy in chronic myeloid leukemiaR01CA178397 · NCI · UNIVERSITY OF UTAH · PI DEININGER, MICHAEL W., O'HARE, THOMAS J. · 2014 to 2018
$2.6M
NCI NIH HHS 5P30CA042014-24NCI NIH HHS P01 CA049639NCI NIH HHS P01CA049639NCI NIH HHS P30 CA042014NCI NIH HHS P30CA042014NCI NIH HHS R01 CA178397NCI NIH HHS R01CA178397NCI NIH HHS T32 CA093247NCI NIH HHS T32CA093247
6 · The paper itself

Abstract

The mechanisms underlying tyrosine kinase inhibitor (TKI) resistance in chronic myeloid leukemia (CML) patients lacking explanatory BCR-ABL1 kinase domain mutations are incompletely understood. To identify mechanisms of TKI resistance that are independent of BCR-ABL1 kinase activity, we introduced a lentiviral short hairpin RNA (shRNA) library targeting ∼5000 cell signaling genes into K562(R), a CML cell line with BCR-ABL1 kinase-independent TKI resistance expressing exclusively native BCR-ABL1. A customized algorithm identified genes whose shRNA-mediated knockdown markedly impaired growth of K562(R) cells compared with TKI-sensitive controls. Among the top candidates were 2 components of the nucleocytoplasmic transport complex, RAN and XPO1 (CRM1). shRNA-mediated RAN inhibition or treatment of cells with the XPO1 inhibitor, KPT-330 (Selinexor), increased the imatinib sensitivity of CML cell lines with kinase-independent TKI resistance. Inhibition of either RAN or XPO1 impaired colony formation of CD34(+) cells from newly diagnosed and TKI-resistant CML patients in the presence of imatinib, without effects on CD34(+) cells from normal cord blood or from a patient harboring the BCR-ABL1(T315I) mutant. These data implicate RAN in BCR-ABL1 kinase-independent imatinib resistance and show that shRNA library screens are useful to identify alternative pathways critical to drug resistance in CML.

Indexed as

Active Transport, Cell NucleusBenzamidesCell Line, TumorCell SurvivalDrug Resistance, NeoplasmExportin 1 ProteinFusion Proteins, bcr-ablGene Knockdown TechniquesGene LibraryHumansHydrazinesImatinib MesylateK562 CellsKaryopherinsLeukemia, Myelogenous, Chronic, BCR-ABL PositiveMutationBCR-ABL1 fusion protein, humanBenzamidesExportin 1 ProteinFusion Proteins, bcr-ablHydrazinesImatinib MesylateKaryopherinsPiperazinesProtein Kinase InhibitorsPyrimidinesran GTP-Binding ProteinRAN protein, humanReceptors, Cytoplasmic and NuclearRNA, Small InterferingselinexorTriazoles

Identifiers

PMID25573989
PMCPMC4357584
OpenAlexW2061647035

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.