Evidence map›Paper›PMID 25573769›Full record

ArticleMicrobiology (Reading, England)2015

(p)ppGpp modulates cell size and the initiation of DNA replication in Caulobacter crescentus in response to a block in lipid biosynthesis.

Kristina V Stott, Shannon M Wood, Jimmy A Blair, Bao T Nguyen, Anabel Herrera, Yannet G Perez Mora, Math P Cuajungco, Sean R Murray

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Mutations inFrontiers in microbiology · 2022
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Multilayered control of chromosome replication inBiochemical Society transactions · 2019
    Review
  10. Article
  11. Bacterial Cell Size: Multifactorial and Multifaceted.Annual review of microbiology · 2017
    Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Kristina V StottDepartment of Biology, Center for Cancer and Developmental Biology, Interdisciplinary Research Institute for the Sciences, California State University Northridge, Northridge, CA 91330-8303, USA.
Shannon M WoodDepartment of Biology, Center for Cancer and Developmental Biology, Interdisciplinary Research Institute for the Sciences, California State University Northridge, Northridge, CA 91330-8303, USA.
Jimmy A BlairDepartment of Chemistry, Williams College, Williamstown, MA 01267, USA.
Bao T NguyenDepartment of Biology, Center for Cancer and Developmental Biology, Interdisciplinary Research Institute for the Sciences, California State University Northridge, Northridge, CA 91330-8303, USA.
Anabel HerreraDepartment of Biology, Center for Cancer and Developmental Biology, Interdisciplinary Research Institute for the Sciences, California State University Northridge, Northridge, CA 91330-8303, USA.
Yannet G Perez MoraDepartment of Biology, Center for Cancer and Developmental Biology, Interdisciplinary Research Institute for the Sciences, California State University Northridge, Northridge, CA 91330-8303, USA.
Math P CuajungcoDepartment of Biological Sciences, California State University Fullerton, Fullerton, CA 92831, USA Mental Health Research Institute, Melbourne Brain Centre, Parkville, Victoria 3052, Australia.
Sean R MurrayDepartment of Biology, Center for Cancer and Developmental Biology, Interdisciplinary Research Institute for the Sciences, California State University Northridge, Northridge, CA 91330-8303, USA sean.murray@csun.edu.
California State University, Northridge · USMental Health Research Institute · AUWilliams College · US

Funding

Integrating lipid biosynthesis with bacterial cell cycle progressionSC2GM084860 · NIGMS · CALIFORNIA STATE UNIVERSITY NORTHRIDGE · PI MURRAY, SEAN · 2008 to 2010
$391k
Analysis of the Transcriptional Regulation and Expression of TRPML2R15NS070774 · NINDS · CALIFORNIA STATE UNIVERSITY FULLERTON · PI CUAJUNGCO, MATH P · 2011 to 2011
$339k
NIGMS NIH HHS SC2 GM084860NINDS NIH HHS R15 NS070774PHS HHS F32 A1082915
6 · The paper itself

Abstract

Stress conditions, such as a block in fatty acid synthesis, signal bacterial cells to exit the cell cycle. Caulobacter crescentus FabH is a cell-cycle-regulated β-ketoacyl-acyl carrier protein synthase that initiates lipid biosynthesis and is essential for growth in rich media. To explore how C. crescentus responds to a block in lipid biosynthesis, we created a FabH-depletion strain. We found that FabH depletion blocks lipid biosynthesis in rich media and causes a cell cycle arrest that requires the alarmone (p)ppGpp for adaptation. Notably, basal levels of (p)ppGpp coordinate both a reduction in cell volume and a block in the over-initiation of DNA replication in response to FabH depletion. The gene ctrA encodes a master transcription factor that directly regulates 95 cell-cycle-controlled genes while also functioning to inhibit the initiation of DNA replication. Here, we demonstrate that ctrA transcription is (p)ppGpp-dependent during fatty acid starvation. CtrA fails to accumulate when FabH is depleted in the absence of (p)ppGpp due to a substantial reduction in ctrA transcription. The (p)ppGpp-dependent maintenance of ctrA transcription during fatty acid starvation initiated from only one of the two ctrA promoters. In the absence of (p)ppGpp, the majority of FabH-depleted cells enter a viable but non-culturable state, with multiple chromosomes, and are unable to recover from the miscoordination of cell cycle events. Thus, basal levels of (p)ppGpp facilitate C. crescentus' re-entry into the cell cycle after termination of fatty acid starvation.

Indexed as

DNA ReplicationBacterial ProteinsCaulobacter crescentusGene Expression Regulation, BacterialGuanine NucleotidesLipidsBacterial ProteinsGuanine Nucleotidesguanosine 5'-diphosphate-3'-monophosphateLipids

Identifiers

PMID25573769
PMCPMC4339654
OpenAlexW2086277159

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.