Evidence map›Paper›PMID 25573482›Full record

ArticleScientific reports2015

The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice.

Yoshihiro Yoshitake, Takayuki Yokoo, Hiroki Saito, Takuji Tsukiyama, Xu Quan, Kazunori Zikihara, Hitomi Katsura, Satoru Tokutomi, Takako Aboshi, Naoki Mori and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. OsCOL5 suppresses heading through modulation of Ghd7 and Ehd2, enhancing rice yield.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  2. A Novel 10-Base Pair Deletion in the First Exon ofInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. Improving yield-related traits by editing the promoter of the heading date gene Ehd1 in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  5. Article
  6. Review
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  8. Article
  9. Review
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  11. Article
  12. Genetic control of flowering time in rice: integration of Mendelian genetics and genomics.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Yoshihiro YoshitakeDivision of Agronomy and Horticulture Science, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Takayuki YokooDivision of Agronomy and Horticulture Science, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Hiroki SaitoDivision of Agronomy and Horticulture Science, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Takuji TsukiyamaDivision of Agronomy and Horticulture Science, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Xu QuanDivision of Agronomy and Horticulture Science, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Kazunori ZikiharaDepartment of Biological Science, Graduate School of Science, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan.
Hitomi KatsuraDepartment of Biological Science, Graduate School of Science, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan.
Satoru TokutomiDepartment of Biological Science, Graduate School of Science, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan.
Takako AboshiDivision of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Naoki MoriDivision of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Hiromo InoueDivision of Agronomy and Horticulture Science, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Hidetaka NishidaGraduate School of Environmental and Life Science, Okayama University, Okayama 700-8530, Japan.
Takayuki KohchiGraduate School of Biostudies, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Masayoshi TeraishiDivision of Agronomy and Horticulture Science, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Yutaka OkumotoDivision of Agronomy and Horticulture Science, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan.
Takatoshi Tanisaka1] Division of Agronomy and Horticulture Science, Graduate School of Agriculture, Kyoto University, Sakyo, Kyoto 606-8502, Japan [2] Department of Agricultural Regional Vitalization, Kibi International University, Minamiawaji, Hyogo, 656-0484, Japan.
Kyoto University · JPOsaka Prefecture University · JPKibi International University · JPOkayama University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants commonly rely on photoperiodism to control flowering time. Rice development before floral initiation is divided into two successive phases: the basic vegetative growth phase (BVP, photoperiod-insensitive phase) and the photoperiod-sensitive phase (PSP). The mechanism responsible for the transition of rice plants into their photoperiod-sensitive state remains elusive. Here, we show that se13, a mutation detected in the extremely early flowering mutant X61 is a nonsense mutant gene of OsHY2, which encodes phytochromobilin (PΦB) synthase, as evidenced by spectrometric and photomorphogenic analyses. We demonstrated that some flowering time and circadian clock genes harbor different expression profiles in BVP as opposed to PSP, and that this phenomenon is chiefly caused by different phytochrome-mediated light signal requirements: in BVP, phytochrome-mediated light signals directly suppress Ehd2, while in PSP, phytochrome-mediated light signals activate Hd1 and Ghd7 expression through the circadian clock genes' expression. These findings indicate that light receptivity through the phytochromes is different between two distinct developmental phases corresponding to the BVP and PSP in the rice flowering process. Our results suggest that these differences might be involved in the acquisition of photoperiod sensitivity in rice.

Indexed as

LightCircadian ClocksFlowersGene Expression Regulation, PlantMutationOryzaOxidoreductasesPhotoperiodPhytochromePlant ProteinsRNA, Double-StrandedRNA InterferenceSignal TransductionOxidoreductasesPhytochromephytochromobilin synthasePlant ProteinsRNA, Double-Stranded

Identifiers

PMID25573482
PMCPMC4287723
OpenAlexW2066133013

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.