Evidence map›Paper›PMID 25572391›Full record

ArticleThe Journal of biological chemistry2015

Defective repair of uracil causes telomere defects in mouse hematopoietic cells.

Haritha Vallabhaneni, Fang Zhou, Robert W Maul, Jaya Sarkar, Jinhu Yin, Ming Lei, Lea Harrington, Patricia J Gearhart, Yie Liu

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. DNA Glycosylases Define the Outcome of Endogenous Base Modifications.International journal of molecular sciences · 2023
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Telomere maintenance: regulatingMolecular & cellular oncology · 2019
    Article
  11. Article
  12. Article
  13. Review
  14. Genetic variation in theOncotarget · 2017
    Article
  15. Article
  16. UNG protects B cells from AID-induced telomere loss.The Journal of experimental medicine · 2016
    Article
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Haritha VallabhaneniFrom the Laboratory of Molecular Gerontology.
Fang ZhouFrom the Laboratory of Molecular Gerontology.
Robert W MaulLaboratory of Molecular Biology and Immunology, NIA, National Institutes of Health, Baltimore, Maryland 21224.
Jaya SarkarFrom the Laboratory of Molecular Gerontology.
Jinhu YinFrom the Laboratory of Molecular Gerontology.
Ming LeiNational Center for Protein Science Shanghai, State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031 China.
Lea HarringtonDepartment of Medicine, Institute for Research in Immunology and Cancer, University of Montréal, Montréal, Québec H3C 3J7, Canada.
Patricia J GearhartLaboratory of Molecular Biology and Immunology, NIA, National Institutes of Health, Baltimore, Maryland 21224, gearhartp@mail.nih.gov.
Yie LiuFrom the Laboratory of Molecular Gerontology, liuyie@mail.nih.gov.
Laboratory of Molecular Genetics · PLNational Institutes of Health · USCenter for Excellence in Molecular Cell Science · CNInstitute for Research in Immunology and Cancer · CA

Funding

Effect of Age on Antibody DiversityZIAAG000777 · NIA · NATIONAL INSTITUTE ON AGING · PI GEARHART, PATRICIA J · 2012 to 2025
$12.6M
The role of DNA damage and repair at telomeresZIAAG000744 · NIA · NATIONAL INSTITUTE ON AGING · PI LIU, YIE · 2009 to 2016
$3.9M
Intramural NIH HHS
6 · The paper itself

Abstract

Uracil in the genome can result from misincorporation of dUTP instead of dTTP during DNA synthesis, and is primarily removed by uracil DNA glycosylase (UNG) during base excision repair. Telomeres contain long arrays of TTAGGG repeats and may be susceptible to uracil misincorporation. Using model telomeric DNA substrates, we showed that the position and number of uracil substitutions of thymine in telomeric DNA decreased recognition by the telomere single-strand binding protein, POT1. In primary mouse hematopoietic cells, uracil was detectable at telomeres, and UNG deficiency further increased uracil loads and led to abnormal telomere lengthening. In UNG-deficient cells, the frequencies of sister chromatid exchange and fragility in telomeres also significantly increased in the absence of telomerase. Thus, accumulation of uracil and/or UNG deficiency interferes with telomere maintenance, thereby underscoring the necessity of UNG-initiated base excision repair for the preservation of telomere integrity.

Indexed as

DNA RepairAnimalsBase SequenceBone Marrow CellsCells, CulturedDNA-Binding ProteinsDNA DamageIn Situ Hybridization, FluorescenceMice, KnockoutProtein BindingShelterin ComplexTelomereTelomere-Binding ProteinsTelomere HomeostasisTelomeric Repeat Binding Protein 1Telomeric Repeat Binding Protein 2DNA-Binding ProteinsPOT1 protein, mouseShelterin ComplexTelomere-Binding ProteinsTelomeric Repeat Binding Protein 1Telomeric Repeat Binding Protein 2ThymineUracilUracil-DNA Glycosidasebase excision repair (BER)shelterintelomerasetelomerase reverse transcriptase (TERT)telomereuracil DNA glycosylaseuracil misincorporation

Identifiers

PMID25572391
PMCPMC4342465
OpenAlexW2024140206

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.