Evidence map›Paper›PMID 25572154›Full record

ArticleThe American journal of pathology2015

Identification of a human papillomavirus-associated oncogenic miRNA panel in human oropharyngeal squamous cell carcinoma validated by bioinformatics analysis of the Cancer Genome Atlas.

Daniel L Miller, J Wade Davis, Kristen H Taylor, Jeff Johnson, Zonggao Shi, Russell Williams, Ulus Atasoy, James S Lewis, M Sharon Stack

Open access · hybridAbstract read
In one paragraph

Article in The American journal of pathology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

  1. Pooled it
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  7. Dysregulated microRNA Expression Relevant toLife (Basel, Switzerland) · 2023
    Article
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  10. Hypermethylation ofMolecular therapy. Nucleic acids · 2022
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  18. Article
  19. The Role of miRNAs in Virus-Mediated Oncogenesis.International journal of molecular sciences · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Daniel L MillerDepartment of Pathology and Anatomical Sciences, University of Missouri School of Medicine, Columbia, Missouri.
J Wade DavisDepartment of Health Management and Informatics, University of Missouri School of Medicine, Columbia, Missouri; Department of Statistics, University of Missouri School of Medicine, Columbia, Missouri.
Kristen H TaylorDepartment of Pathology and Anatomical Sciences, University of Missouri School of Medicine, Columbia, Missouri.
Jeff JohnsonDepartment of Chemistry and Biochemistry, University of Notre Dame, South Bend, Indiana; Harper Cancer Research Institute, University of Notre Dame, South Bend, Indiana.
Zonggao ShiDepartment of Chemistry and Biochemistry, University of Notre Dame, South Bend, Indiana; Harper Cancer Research Institute, University of Notre Dame, South Bend, Indiana.
Russell WilliamsDepartment of Biochemistry, Indiana University South Bend, South Bend, Indiana.
Ulus AtasoyDepartment of Surgery, University of Missouri School of Medicine, Columbia, Missouri.
James S LewisDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri; Department of Otolaryngology Head and Neck Surgery, Washington University School of Medicine, St. Louis, Missouri.
M Sharon StackDepartment of Chemistry and Biochemistry, University of Notre Dame, South Bend, Indiana; Harper Cancer Research Institute, University of Notre Dame, South Bend, Indiana. Electronic address: sstack@nd.edu.
University of Missouri · USCancer Research Institute · USIndiana University South Bend · USUniversity of Missouri Health System · USUniversity of Notre Dame · USWashington University in St. Louis · US

Funding

HuR in Allergic Asthma and T Cell DifferentiationR01AI080870 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI ATASOY, ULUS · 2009 to 2019
$3.6M
Interaction of uPAR & Integrins in Oral CancerR01CA085870 · NCI · UNIVERSITY OF NOTRE DAME · PI STACK, MARY SHARON · 2001 to 2010
$2.1M
MicroRNA Profiling and Tumor Progression in HPV+ Oropharyngeal CancerF31DE021926 · NIDCR · UNIVERSITY OF MISSOURI-COLUMBIA · PI MILLER, DANIEL L · 2011 to 2013
$94k
NCI NIH HHS R01 CA085870NIAID NIH HHS R01 AI080870NIDCR NIH HHS F31 DE021926
6 · The paper itself

Abstract

High-risk human papillomavirus (HPV) is a causative agent for an increasing subset of oropharyngeal squamous cell carcinomas (OPSCCs), and current evidence supports these tumors as having identifiable risk factors and improved response to therapy. However, the biochemical and molecular alterations underlying the pathobiology of HPV-associated OPSCC (designated HPV(+) OPSCC) remain unclear. Herein, we profile miRNA expression patterns in HPV(+) OPSCC to provide a more detailed understanding of pathologic molecular events and to identify biomarkers that may have applicability for early diagnosis, improved staging, and prognostic stratification. Differentially expressed miRNAs were identified in RNA isolated from an initial clinical cohort of HPV(+/-) OPSCC tumors by quantitative PCR-based miRNA profiling. This oncogenic miRNA panel was validated using miRNA sequencing and clinical data from The Cancer Genome Atlas and miRNA in situ hybridization. The HPV-associated oncogenic miRNA panel has potential utility in diagnosis and disease stratification and in mechanistic elucidation of molecular factors that contribute to OPSCC development, progression, and differential response to therapy.

Indexed as

MicroRNAsCarcinoma, Squamous CellCell Line, TumorComputational BiologyDNA, ViralHuman papillomavirus 16HumansMiddle AgedOropharyngeal NeoplasmsPapillomavirus InfectionsDNA, ViralMicroRNAs

Identifiers

PMID25572154
PMCPMC4348472
OpenAlexW2033003340

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.