Evidence map›Paper›PMID 25569861›Full record

ArticleIET systems biology2015

Evolutionary dynamics of morphological stability in a long-term experiment with Escherichia coli.

Fangshu Cui, Bo Yuan

Abstract read
In one paragraph

Article in IET systems biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Fangshu CuiDepartment of Computer Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China.
Bo YuanDepartment of Computer Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China. boyuan@sjtu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To investigate the questions in morphological evolution, some biologists seek to carry out evolution experiments owing to the incompleteness and uncontrollability of the fossil record and natural populations. To quantitatively analyse the morphology (cell size) evolution observed from a long-term experiment with Escherichia coli, the authors present three mathematical approximations to the Wright-Fisher model of the morphological evolution. They firstly use a deterministic approximation, which fails to predict evolutionary dynamics of cell size and proves the importance of stochasticity in large populations. Then, they develop a stochastic approximation and derive an analytic expression for the anticipated waiting time to reach the stability of cell size. The results show that the calculation of this waiting time is in good agreement with the experimental data and that the selective advantage plays a prominent role in cell size evolution, with mutation rate and population size having less impact. Finally, they employ a multistep process to approximate the Wright-Fisher model of cell size evolution and acquire an analytical formula for the median waiting time until the stability of cell size. This median time supports the idea that the selective advantage is the dominant force for the morphological evolution in the long-term experiment.

Indexed as

Biological EvolutionCell SizeModels, GeneticCell EnlargementComputer SimulationEscherichia coliMorphogenesisMutation

Identifiers

PMID25569861
PMCPMC8687259

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.