Evidence map›Paper›PMID 25569290›Full record

ArticlePLoS neglected tropical diseases2015

Mycobacterium africanum is associated with patient ethnicity in Ghana.

Adwoa Asante-Poku, Dorothy Yeboah-Manu, Isaac Darko Otchere, Samuel Y Aboagye, David Stucki, Jan Hattendorf, Sonia Borrell, Julia Feldmann, Emelia Danso, Sebastien Gagneux

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02744469 (Implications of the Population Structure of the Mycobacterium Tuberculosis Complex in Benin for Tuberculosis Presentation, Diagnosis and Outcome), which is not on this map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02744469 completednot on this mapstarted 2016, after this paper: background citation

Implications of the Population Structure of the Mycobacterium Tuberculosis Complex in Benin for Tuberculosis Presentation, Diagnosis and Outcome

TypeobservationalSponsorLaboratoire de Référence des MycobactériesRan2016 to 2019Enrolled1,490ConditionsTuberculosisArmsNo intervention (observational study)
3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
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  3. Article
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  6. Article
  7. Review
  8. Review
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  11. Macrophage susceptibility to infection by GhanaianFrontiers in cellular and infection microbiology · 2023
    Article
  12. Editorial: Beneficial and detrimental host cellular responses againstFrontiers in cellular and infection microbiology · 2023
    Article
  13. Article
  14. Review
  15. Evolution ofFrontiers in cellular and infection microbiology · 2022
    Review
  16. Article
  17. Article
  18. Phylogenomics ofMicrobial genomics · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Adwoa Asante-PokuBacteriology Department, Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana; Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland; University of Basel, Basel, Switzerland.
Dorothy Yeboah-ManuBacteriology Department, Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana.
Isaac Darko OtchereBacteriology Department, Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana.
Samuel Y AboagyeBacteriology Department, Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana.
David StuckiDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland; University of Basel, Basel, Switzerland.
Jan HattendorfUniversity of Basel, Basel, Switzerland; Department of Epidemiology and Public Health, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Sonia BorrellDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland; University of Basel, Basel, Switzerland.
Julia FeldmannDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland; University of Basel, Basel, Switzerland.
Emelia DansoBacteriology Department, Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana.
Sebastien GagneuxDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland; University of Basel, Basel, Switzerland.
University of Basel · CHUniversity of Ghana · GHNoguchi Memorial Institute for Medical Research · GH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium africanum is a member of the Mycobacterium tuberculosis complex (MTBC) and an important cause of human tuberculosis in West Africa that is rarely observed elsewhere. Here we genotyped 613 MTBC clinical isolates from Ghana, and searched for associations between the different phylogenetic lineages of MTBC and patient variables. We found that 17.1% (105/613) of the MTBC isolates belonged to M. africanum, with the remaining belonging to M. tuberculosis sensu stricto. No M. bovis was identified in this sample. M. africanum was significantly more common in tuberculosis patients belonging to the Ewe ethnic group (adjusted odds ratio: 3.02; 95% confidence interval: 1.67-5.47, p<0.001). Stratifying our analysis by the two phylogenetic lineages of M. africanum (i.e. MTBC Lineages 5 and 6) revealed that this association was mainly driven by Lineage 5 (also known as M. africanum West Africa 1). Our findings suggest interactions between the genetic diversity of MTBC and human diversity, and offer a possible explanation for the geographical restriction of M. africanum to parts of West Africa.

Indexed as

AdolescentAdultAgedChildFemaleGenotypeGhanaHumansMaleMiddle AgedMycobacterium tuberculosisPhylogenyTuberculosis

Identifiers

PMID25569290
PMCPMC4287525
OpenAlexW2072377247

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.