Evidence map›Paper›PMID 25568942›Full record

ArticlePLoS neglected tropical diseases2015

Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty.

Jason Carnes, Atashi Anupama, Oliver Balmer, Andrew Jackson, Michael Lewis, Rob Brown, Igor Cestari, Marc Desquesnes, Claire Gendrin, Christiane Hertz-Fowler and 17 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed.

  1. Pathogens (Basel, Switzerland) · 2026
    Article
  2. Review
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  5. Article
  6. Why Euglenozoans.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Analysis ofVeterinary sciences · 2024
    Article
  11. Molecular identification of new Trypanosoma evansi type non-A/B isolates from buffaloes and cattle in Indonesia.Revista brasileira de parasitologia veterinaria = Brazilian journal of veterinary parasitology : Orgao Oficial do Colegio Brasileiro de Parasitologia Veterinaria · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Virulence · 2022
    Article
  17. Article
  18. Review
  19. Article
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Jason CarnesSeattle Biomedical Research Institute, Seattle, United States of America.
Atashi AnupamaSeattle Biomedical Research Institute, Seattle, United States of America.
Oliver BalmerSwiss Tropical and Public Health Institute, Basel, Switzerland.
Andrew JacksonDepartment of Infection Biology, Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom.
Michael LewisDepartment of Pathogen Molecular Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Rob BrownSeattle Biomedical Research Institute, Seattle, United States of America.
Igor CestariSeattle Biomedical Research Institute, Seattle, United States of America.
Marc DesquesnesCIRAD, UMR-InterTryp, Montpellier, France; Faculty of Veterinary Medicine, Kasetsart University, Bangkok, Thailand.
Claire GendrinSeattle Biomedical Research Institute, Seattle, United States of America.
Christiane Hertz-FowlerCentre for Genomic Research, Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom.
Hideo ImamuraUnit of Molecular Parasitology, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium.
Alasdair IvensCentre of Immunity, Infection and Evolution, University of Edinburgh, Edinburgh, United Kingdom.
Luděk KořenýBiology Centre, Institute of Parasitology, Czech Academy of Sciences, České Budějovice (Budweis), Czech Republic; Faculty of Sciences, University of South Bohemia, Centre, České Budějovice (Budweis), Czech Republic.
De-Hua LaiBiology Centre, Institute of Parasitology, Czech Academy of Sciences, České Budějovice (Budweis), Czech Republic; Faculty of Sciences, University of South Bohemia, Centre, České Budějovice (Budweis), Czech Republic; Center for Parasitic Organisms, State Key Laboratory of Biocontrol, School of Life Sciences, and Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou, People's Republic of China.
Annette MacLeodWellcome Trust Centre for Molecular Parasitology, Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.
Suzanne M McDermottSeattle Biomedical Research Institute, Seattle, United States of America.
Chris MerrittSeattle Biomedical Research Institute, Seattle, United States of America.
Severine MonneratSeattle Biomedical Research Institute, Seattle, United States of America.
Wonjong MoonSeattle Biomedical Research Institute, Seattle, United States of America.
Peter MylerSeattle Biomedical Research Institute, Seattle, United States of America.
Isabelle PhanSeattle Biomedical Research Institute, Seattle, United States of America.
Gowthaman RamasamySeattle Biomedical Research Institute, Seattle, United States of America.
Dhileep SivamSeattle Biomedical Research Institute, Seattle, United States of America.
Zhao-Rong LunCenter for Parasitic Organisms, State Key Laboratory of Biocontrol, School of Life Sciences, and Key Laboratory of Tropical Disease Control of Ministry of Education, Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou, People's Republic of China.
Julius LukešBiology Centre, Institute of Parasitology, Czech Academy of Sciences, České Budějovice (Budweis), Czech Republic; Faculty of Sciences, University of South Bohemia, Centre, České Budějovice (Budweis), Czech Republic; Canadian Institute for Advanced Research, Toronto, Canada.
Ken StuartSeattle Biomedical Research Institute, Seattle, United States of America; Department of Global Health, University of Washington, Seattle, United States of America.
Achim SchnauferCentre of Immunity, Infection and Evolution, University of Edinburgh, Edinburgh, United Kingdom; Institute of Immunology & Infection Research, University of Edinburgh, Edinburgh, United Kingdom.

Funding

MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR01AI014102 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI KENNETH D STUART · 1985 to 2026
$20.9M
Mitochondrial Function in Bloodstream Trypanosoma bruceiR01AI069057 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI PARSONS, MARILYN · 2007 to 2011
$1.9M
MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR37AI014102 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 1992 to 2001
$971k
Medical Research Council G0600129NIAID NIH HHS AI014102NIAID NIH HHS AI69057NIAID NIH HHS R01 AI014102NIAID NIH HHS R01 AI069057NIAID NIH HHS R37 AI014102Wellcome Trust 095201Wellcome Trust 104111
6 · The paper itself

Abstract

Two key biological features distinguish Trypanosoma evansi from the T. brucei group: independence from the tsetse fly as obligatory vector, and independence from the need for functional mitochondrial DNA (kinetoplast or kDNA). In an effort to better understand the molecular causes and consequences of these differences, we sequenced the genome of an akinetoplastic T. evansi strain from China and compared it to the T. b. brucei reference strain. The annotated T. evansi genome shows extensive similarity to the reference, with 94.9% of the predicted T. b. brucei coding sequences (CDS) having an ortholog in T. evansi, and 94.6% of the non-repetitive orthologs having a nucleotide identity of 95% or greater. Interestingly, several procyclin-associated genes (PAGs) were disrupted or not found in this T. evansi strain, suggesting a selective loss of function in the absence of the insect life-cycle stage. Surprisingly, orthologous sequences were found in T. evansi for all 978 nuclear CDS predicted to represent the mitochondrial proteome in T. brucei, although a small number of these may have lost functionality. Consistent with previous results, the F1FO-ATP synthase γ subunit was found to have an A281 deletion, which is involved in generation of a mitochondrial membrane potential in the absence of kDNA. Candidates for CDS that are absent from the reference genome were identified in supplementary de novo assemblies of T. evansi reads. Phylogenetic analyses show that the sequenced strain belongs to a dominant group of clonal T. evansi strains with worldwide distribution that also includes isolates classified as T. equiperdum. At least three other types of T. evansi or T. equiperdum have emerged independently. Overall, the elucidation of the T. evansi genome sequence reveals extensive similarity of T. brucei and supports the contention that T. evansi should be classified as a subspecies of T. brucei.

Indexed as

Genome, ProtozoanPhylogenyGene Expression RegulationMicrosatellite RepeatsPolymorphism, Single NucleotidePrincipal Component AnalysisProtozoan ProteinsTrypanosomaVariant Surface Glycoproteins, TrypanosomaProtozoan ProteinsVariant Surface Glycoproteins, Trypanosoma

Identifiers

PMID25568942
PMCPMC4288722

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.