Evidence map›Paper›PMID 25568312›Full record

ArticleThe Journal of biological chemistry2015

Functional role of RNA polymerase II and P70 S6 kinase in KCl withdrawal-induced cerebellar granule neuron apoptosis.

Jaya Padmanabhan, Kristy R Brown, Amelia Padilla, Michael L Shelanski

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Jaya PadmanabhanFrom the Department of Molecular Medicine, University of South Florida Health Byrd Alzheimer's Institute, University of South Florida, Tampa, Florida 33613 and jpadmana@health.usf.edu.
Kristy R Brownthe Department of Pathology and Cell Biology, Taub Center for Alzheimer's Disease, College of Physicians and Surgeons, Columbia University, New York, New York 10032.
Amelia PadillaFrom the Department of Molecular Medicine, University of South Florida Health Byrd Alzheimer's Institute, University of South Florida, Tampa, Florida 33613 and.
Michael L Shelanskithe Department of Pathology and Cell Biology, Taub Center for Alzheimer's Disease, College of Physicians and Surgeons, Columbia University, New York, New York 10032.
Columbia University · USUniversity of South Florida · USUSF Health Byrd Alzheimer's Institute · US

Funding

PATHOLOGY AND BIOLOGY OF THE NEURONAL FIBROUS PROTEINSR01NS015076 · NINDS · NEW YORK UNIVERSITY · PI SHELANSKI, MICHAEL L · 1985 to 2007
$2.5M
Regulatory functions of alpha 1-antichymotrypsin in inflammation and Alzheimer'sR21AG031429 · NIA · UNIVERSITY OF SOUTH FLORIDA · PI PADMANABHAN, JAYA · 2010 to 2011
$326k
NIA NIH HHS 1R21AG031429-01A2NIA NIH HHS R21 AG031429NINDS NIH HHS NS-15076NINDS NIH HHS R01 NS015076
6 · The paper itself

Abstract

KCl withdrawal-induced apoptosis in cerebellar granule neurons is associated with aberrant cell cycle activation, and treatment with cyclin-dependent kinase (Cdk) inhibitors protects cells from undergoing apoptosis. Because the Cdk inhibitor flavopiridol is known to inhibit RNA polymerase II (Pol II)-dependent transcription elongation by inhibiting the positive transcription elongation factor b (P-TEFb, a complex of CDK9 and cyclin T), we examined whether inhibition of RNA Pol II protects neurons from apoptosis. Treatment of neurons with 5, 6-dichloro-1-β-D-ribobenzimidazole (DRB), an RNA Pol II-dependent transcription elongation inhibitor, and flavopiridol inhibited phosphorylation and activation of Pol II and protected neurons from undergoing apoptosis. In addition to Pol II, neurons subjected to KCl withdrawal showed increased phosphorylation and activation of p70 S6 kinase, which was inhibited by both DRB and flavopiridol. Immunostaining analysis of the neurons deprived of KCl showed increased nuclear levels of phospho-p70 S6 kinase, and neurons protected with DRB and flavopiridol showed accumulation of the kinase into large spliceosome assembly factor-positive speckle domains within the nuclei. The formation of these foci corresponded with cell survival, and removal of the inhibitors resulted in dispersal of the speckles into smaller foci with subsequent apoptosis induction. Because p70 S6 kinase is known to induce translation of mRNAs containing a 5'-terminal oligopyrimidine tract, our data suggest that transcription and translation of this subset of mRNAs may contribute to KCl withdrawal-induced apoptosis in neurons.

Indexed as

ApoptosisFlavonoidsPiperidinesAnimalsBlotting, WesternCells, CulturedCerebellumCyclin-Dependent KinasesDichlororibofuranosylbenzimidazoleEnzyme InhibitorsImmunohistochemistryNeuronsPhosphorylationPotassium ChlorideRats, Sprague-DawleyReverse Transcriptase Polymerase Chain ReactionalvocidibCyclin-Dependent KinasesDichlororibofuranosylbenzimidazoleEnzyme InhibitorsFlavonoidsPiperidinesPotassium ChlorideRibosomal Protein S6 Kinases, 70-kDaRNA Polymerase IIApoptosisCyclin-dependent Kinase (CDK)NeuronRNA Polymerase IIS6 KinaseTranscriptionTranslation

Identifiers

PMID25568312
PMCPMC4342447
OpenAlexW2095557363

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.