Evidence map›Paper›PMID 25568088›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Loss of autophagy causes a synthetic lethal deficiency in DNA repair.

Emma Y Liu, Naihan Xu, Jim O'Prey, Laurence Y Lao, Sanket Joshi, Jaclyn S Long, Margaret O'Prey, Daniel R Croft, Florian Beaumatin, Alice D Baudot and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed, 1 pooled it
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 1 synthesis or guideline pooled it, 158 citations in OpenAlex.

  1. Guideline
  2. Autophagy modulation in cancer.Nature reviews. Drug discovery · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Role of Tumor Cell Intrinsic and Host Autophagy in Cancer.Cold Spring Harbor perspectives in medicine · 2024
    Review
  19. Article
  20. Article

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Emma Y LiuCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Naihan XuCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and Division of Life Science, Graduate School at Shenzhen, Tsinghua University, Shenzhen 518055, China.
Jim O'PreyCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Laurence Y LaoCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Sanket JoshiCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Jaclyn S LongCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Margaret O'PreyCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Daniel R CroftCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Florian BeaumatinCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Alice D BaudotCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Michaela MrschtikCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Mathias RosenfeldtCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Yaou ZhangDivision of Life Science, Graduate School at Shenzhen, Tsinghua University, Shenzhen 518055, China.
David A GillespieCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and.
Kevin M RyanCancer Research UK Beatson Institute, Glasgow G61 1BD, United Kingdom; and k.ryan@beatson.gla.ac.uk.
Cancer Research UK Scotland Institute · GBTsinghua University · CN

Funding

Cancer Research UK 15816Worldwide Cancer Research 09-0170Worldwide Cancer Research 11-0285Worldwide Cancer Research 12-1262
6 · The paper itself

Abstract

(Macro)autophagy delivers cellular constituents to lysosomes for degradation. Although a cytoplasmic process, autophagy-deficient cells accumulate genomic damage, but an explanation for this effect is currently unclear. We report here that inhibition of autophagy causes elevated proteasomal activity leading to enhanced degradation of checkpoint kinase 1 (Chk1), a pivotal factor for the error-free DNA repair process, homologous recombination (HR). We show that loss of autophagy critically impairs HR and that autophagy-deficient cells accrue micronuclei and sub-G1 DNA, indicators of diminished genomic integrity. Moreover, due to impaired HR, autophagy-deficient cells are hyperdependent on nonhomologous end joining (NHEJ) for repair of DNA double-strand breaks. Consequently, inhibition of NHEJ following DNA damage in the absence of autophagy results in persistence of genomic lesions and rapid cell death. Because autophagy deficiency occurs in several diseases, these findings constitute an important link between autophagy and DNA repair and highlight a synthetic lethal strategy to kill autophagy-deficient cells.

Indexed as

AutophagyGenes, LethalAnimalsBase SequenceCells, CulturedDNA PrimersDNA RepairHomologous RecombinationMiceReal-Time Polymerase Chain ReactionDNA Primersautophagycell deathDNA repairsynthetic lethality

Identifiers

PMID25568088
PMCPMC4311830
OpenAlexW2060607011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.