Evidence map›Paper›PMID 25564853›Full record

ArticleBiophysical journal2015

Probing binding sites and mechanisms of action of an I(Ks) activator by computations and experiments.

Yu Xu, Yuhong Wang, Mei Zhang, Min Jiang, Avia Rosenhouse-Dantsker, Tsjerk Wassenaar, Gea-Ny Tseng

Abstract readValidation Study
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Mapping the Functional Landscape ofmedRxiv : the preprint server for health sciences · 2025
    Article
  3. Article
  4. Article
  5. Voltage sensors.Molecular pharmacology · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. IBiomedicines · 2023
    Article
  10. Structural mechanisms for the activation of human cardiac KCNQ1 channel by electro-mechanical coupling enhancers.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Chemical modulation of Kv7 potassium channels.RSC medicinal chemistry · 2021
    Review
  16. Insights into Cardiac IKs (KCNQ1/KCNE1) Channels Regulation.International journal of molecular sciences · 2020
    Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yu XuDepartment of Physiology & Biophysics, Virginia Commonwealth University, Richmond, Virginia.
Yuhong WangDepartment of Physiology & Biophysics, Virginia Commonwealth University, Richmond, Virginia.
Mei ZhangDepartment of Physiology & Biophysics, Virginia Commonwealth University, Richmond, Virginia.
Min JiangDepartment of Physiology & Biophysics, Virginia Commonwealth University, Richmond, Virginia.
Avia Rosenhouse-DantskerDepartment of Medicine, Pulmonary Section, University of Illinois at Chicago, Illinois; Department of Chemistry, University of Illinois at Chicago, Illinois.
Tsjerk WassenaarDepartment of Biology, University of Erlangen-Nürnberg, Erlangen, Germany.
Gea-Ny TsengDepartment of Physiology & Biophysics, Virginia Commonwealth University, Richmond, Virginia. Electronic address: gtseng@vcu.edu.

Funding

STRUCTURE-FUNCTION RELATION & MODULATION OF Kv CHANNELSR01HL107294 · NHLBI · VIRGINIA COMMONWEALTH UNIVERSITY · PI TSENG, GEA-NY · 2012 to 2015
$1.5M
NHLBI NIH HHS R01 HL107294
6 · The paper itself

Abstract

The slow delayed rectifier (IKs) channel is composed of the KCNQ1 channel and KCNE1 auxiliary subunit, and functions to repolarize action potentials in the human heart. IKs activators may provide therapeutic efficacy for treating long QT syndromes. Here, we show that a new KCNQ1 activator, ML277, can enhance IKs amplitude in adult guinea pig and canine ventricular myocytes. We probe its binding site and mechanism of action by computational analysis based on our recently reported KCNQ1 and KCNQ1/KCNE1 3D models, followed by experimental validation. Results from a pocket analysis and docking exercise suggest that ML277 binds to a side pocket in KCNQ1 and the KCNE1-free side pocket of KCNQ1/KCNE1. Molecular-dynamics (MD) simulations based on the most favorable channel/ML277 docking configurations reveal a well-defined ML277 binding space surrounded by the S2-S3 loop and S4-S5 helix on the intracellular side, and by S4-S6 transmembrane helices on the lateral sides. A detailed analysis of MD trajectories suggests two mechanisms of ML277 action. First, ML277 restricts the conformational dynamics of the KCNQ1 pore, optimizing K(+) ion coordination in the selectivity filter and increasing current amplitudes. Second, ML277 binding induces global motions in the channel, including regions critical for KCNQ1 gating transitions. We conclude that ML277 activates IKs by binding to an intersubunit space and allosterically influencing pore conductance and gating transitions. KCNE1 association protects KCNQ1 from an arrhythmogenic (constitutive current-inducing) effect of ML277, but does not preclude its current-enhancing effect.

Indexed as

AnimalsBinding SitesCells, CulturedChlorocebus aethiopsCOS CellsDelayed Rectifier Potassium ChannelsDogsGuinea PigsIonsMolecular Dynamics SimulationMutagenesis, Site-DirectedMyocytes, CardiacNeurotransmitter AgentsOocytesPatch-Clamp TechniquesPotassiumDelayed Rectifier Potassium ChannelsIonsNeurotransmitter AgentsPotassium

Identifiers

PMID25564853
PMCPMC4286593

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.