Evidence map›Paper›PMID 25564525›Full record

ArticleNucleic acids research2015

Escherichia coli antitoxin MazE as transcription factor: insights into MazE-DNA binding.

Valentina Zorzini, Lieven Buts, Evelyne Schrank, Yann G J Sterckx, Michal Respondek, Hanna Engelberg-Kulka, Remy Loris, Klaus Zangger, Nico A J van Nuland

Abstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. The Bro-Xre toxin-antitoxin modules inFrontiers in microbiology · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Physical and Functional Interplay between MazFApplied and environmental microbiology · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Valentina ZorziniMolecular Recognition Unit, Structural Biology Research Center, VIB, Pleinlaan 2, 1050 Brussels, Belgium Structural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium.
Lieven ButsMolecular Recognition Unit, Structural Biology Research Center, VIB, Pleinlaan 2, 1050 Brussels, Belgium Structural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium.
Evelyne SchrankInstitute of Chemistry/Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria.
Yann G J SterckxMolecular Recognition Unit, Structural Biology Research Center, VIB, Pleinlaan 2, 1050 Brussels, Belgium Structural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium.
Michal RespondekInstitute of Chemistry/Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria.
Hanna Engelberg-KulkaDepartment of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada (IMRIC), The Hebrew University-Hadassah Medical School, Jerusalem 91120, Israel.
Remy LorisMolecular Recognition Unit, Structural Biology Research Center, VIB, Pleinlaan 2, 1050 Brussels, Belgium Structural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium.
Klaus ZanggerInstitute of Chemistry/Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria.
Nico A J van NulandMolecular Recognition Unit, Structural Biology Research Center, VIB, Pleinlaan 2, 1050 Brussels, Belgium Structural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium nvnuland@vub.ac.be.

Funding

Austrian Science Fund FWF P 25880
6 · The paper itself

Abstract

Toxin-antitoxin (TA) modules are pairs of genes essential for bacterial regulation upon environmental stresses. The mazEF module encodes the MazF toxin and its cognate MazE antitoxin. The highly dynamic MazE possesses an N-terminal DNA binding domain through which it can negatively regulate its own promoter. Despite being one of the first TA systems studied, transcriptional regulation of Escherichia coli mazEF remains poorly understood. This paper presents the solution structure of C-terminal truncated E. coli MazE and a MazE-DNA model with a DNA palindrome sequence ∼ 10 bp upstream of the mazEF promoter. The work has led to a transcription regulator-DNA model, which has remained elusive thus far in the E. coli toxin-antitoxin family. Multiple complementary techniques including NMR, SAXS and ITC show that the long intrinsically disordered C-termini in MazE, required for MazF neutralization, does not affect the interactions between the antitoxin and its operator. Rather, the MazE C-terminus plays an important role in the MazF binding, which was found to increase the MazE affinity for the palindromic single site operator.

Indexed as

DNA, BacterialDNA-Binding ProteinsEndoribonucleasesEscherichia coli ProteinsInverted Repeat SequencesModels, MolecularOperator Regions, GeneticProtein BindingProtein Structure, TertiaryTranscription FactorsDNA, BacterialDNA-Binding ProteinsEndoribonucleasesEscherichia coli ProteinsMazE protein, E coliMazF protein, E coliTranscription Factors

Identifiers

PMID25564525
PMCPMC4333400

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.