Evidence map›Paper›PMID 25563849›Full record

ArticleScientific reports2015

Insights into the species-specific TLR4 signaling mechanism in response to Rhodobacter sphaeroides lipid A detection.

Muhammad Ayaz Anwar, Suresh Panneerselvam, Masaud Shah, Sangdun Choi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 57 citations in OpenAlex.

  1. Determining theFrontiers in microbiology · 2025
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  6. Review
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  8. Article
  9. Host and Species-Specificities of Pattern Recognition Receptors Upon Infection WithFrontiers in cellular and infection microbiology · 2022
    Review
  10. Article
  11. Toll-like receptor 4 (TLR4) antagonists as potential therapeutics for intestinal inflammation.Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology · 2021
    Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Tracing the evolution of novel features of human Toll-like receptor 4.Protein science : a publication of the Protein Society · 2019
    Article
  18. Article
  19. Article
  20. Natural Products with Toll-Like Receptor 4 Antagonist Activity.International journal of inflammation · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Muhammad Ayaz AnwarDepartment of Molecular Science and Technology, Ajou University, Suwon, 443-749, Korea.
Suresh PanneerselvamDepartment of Molecular Science and Technology, Ajou University, Suwon, 443-749, Korea.
Masaud ShahDepartment of Molecular Science and Technology, Ajou University, Suwon, 443-749, Korea.
Sangdun ChoiDepartment of Molecular Science and Technology, Ajou University, Suwon, 443-749, Korea.
Ajou University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TLR4 in complex with MD2 senses the presence of lipid A (LA) and initiates a signaling cascade that curb the infection. This complex is evolutionarily conserved and can initiate the immune system in response to a variety of LAs. In this study, molecular dynamics simulation (25 ns) was performed to elucidate the differential behavior of TLR4/MD2 complex in response to Rhodobacter sphaeroides lipid A (RsLA). Penta-acyl chain-containing RsLA is at the verge of agonist (6 acyl-chains) and antagonist (4 acyl-chains) structure, and activates the TLR4 pathway in horses and hamsters, while inhibiting in humans and murine. In the time-evolved coordinates, the promising factors that dictated the differential response included the local and global mobility pattern of complexes, solvent-accessible surface area of ligand, and surface charge distributions of TLR4 and MD2. We showed that the GlcN1-GlcN2 backbone acquires agonist (3FXI)-like configurations in horses and hamsters, while acquiring antagonist (2E59)-like configurations in humans and murine systems. Moreover, analysis of F126 behavior in the MD2 F126 loop (amino acids 123-129) and loop EF (81-89) suggested that certain sequence variations also contribute to species-specific response. This study underlines the TLR4 signaling mechanism and provides new therapeutic opportunities.

Indexed as

AnimalsCricetinaeHorsesHumansLigandsLipid ALymphocyte Antigen 96MiceMolecular Dynamics SimulationProtein BindingProtein Structure, TertiaryRhodobacter sphaeroidesSignal TransductionSpecies SpecificityStatic ElectricityThermodynamicsLigandsLipid ALymphocyte Antigen 96Toll-Like Receptor 4

Identifiers

PMID25563849
PMCPMC4288214
OpenAlexW2028658694

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.