Evidence map›Paper›PMID 25563704›Full record

ArticleJournal of biomolecular NMR2015

A minor conformation of a lanthanide tag on adenylate kinase characterized by paramagnetic relaxation dispersion NMR spectroscopy.

Mathias A S Hass, Wei-Min Liu, Roman V Agafonov, Renee Otten, Lien A Phung, Jesika T Schilder, Dorothee Kern, Marcellus Ubbink

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Article in Journal of biomolecular NMR, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

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8citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

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8 citing papers in PubMed.

  1. Review
  2. Article
  3. Recent Advances in NMR Protein Structure Prediction with ROSETTA.International journal of molecular sciences · 2023
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  5. Review
  6. Article
  7. Review
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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Mathias A S HassLeiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
Wei-Min Liu
Roman V Agafonov
Renee Otten
Lien A Phung
Jesika T Schilder
Dorothee Kern
Marcellus Ubbink

Funding

Collaborative experimental & computational studies of conformational transitionsR01GM100966 · NIGMS · BRANDEIS UNIVERSITY · PI HAGAN, MICHAEL F, KERN, DOROTHEE · 2013 to 2016
$1.2M
Howard Hughes Medical Institute DRG-2114-12NIGMS NIH HHS GM100966-01
6 · The paper itself

Abstract

NMR relaxation dispersion techniques provide a powerful method to study protein dynamics by characterizing lowly populated conformations that are in dynamic exchange with the major state. Paramagnetic NMR is a versatile tool for investigating the structures and dynamics of proteins. These two techniques were combined here to measure accurate and precise pseudocontact shifts of a lowly populated conformation. This method delivers valuable long-range structural restraints for higher energy conformations of macromolecules in solution. Another advantage of combining pseudocontact shifts with relaxation dispersion is the increase in the amplitude of dispersion profiles. Lowly populated states are often involved in functional processes, such as enzyme catalysis, signaling, and protein/protein interactions. The presented results also unveil a critical problem with the lanthanide tag used to generate paramagnetic relaxation dispersion effects in proteins, namely that the motions of the tag can interfere severely with the observation of protein dynamics. The two-point attached CLaNP-5 lanthanide tag was linked to adenylate kinase. From the paramagnetic relaxation dispersion only motion of the tag is observed. The data can be described accurately by a two-state model in which the protein-attached tag undergoes a 23° tilting motion on a timescale of milliseconds. The work demonstrates the large potential of paramagnetic relaxation dispersion and the challenge to improve current tags to minimize relaxation dispersion from tag movements.

Indexed as

Adenylate KinaseLanthanoid Series ElementsModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein ConformationAdenylate KinaseLanthanoid Series Elements

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.