ArticleScientific reports2015
Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 3 of them syntheses that pooled it.
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39 citing papers in PubMed, 3 syntheses or guidelines pooled it, 85 citations in OpenAlex.
- Meta-analysis of identified genomic regions and candidate genes underlying salinity tolerance in rice (Oryza sativa L.).Scientific reports · 2024Pooled it
- Meta-QTL and ortho-MQTL analyses identified genomic regions controlling rice yield, yield-related traits and root architecture under water deficit conditions.Scientific reports · 2021Pooled it
- CCT domain-containing genes in cereal crops: flowering time and beyond.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Pooled it
- Genome-wide identification and characterization of GATA transcription factors in Avena sativa L. and expression profiling under salinity stress.Journal of applied genetics · 2026Article
- Comparative transcriptome analysis reveals key genes and regulatory networks regulating flowering in rice varieties with different photoperiod sensitivity.BMC plant biology · 2026Article
- Identification of Gene Regulatory Network for Nitrogen-Promoted Tiller Regrowth in Perennial Rice.Rice (New York, N.Y.) · 2026Article
- Genome-wide identification and expression analysis of the CCT gene family reveals its function in regulating heading date in proso millet (Frontiers in plant science · 2026Article
- Genome-wide identification and characterization of the CCT gene family in Chinese cabbage (Brassica rapa) response to abiotic stress.BMC genomics · 2025Article
- Genome-Wide Identification and Characterization of CCT Gene Family from Microalgae to Legumes.Genes · 2024Article
- OsCOL5 suppresses heading through modulation of Ghd7 and Ehd2, enhancing rice yield.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genome-Wide Identification and Characterization of theInternational journal of molecular sciences · 2024Article
- Genome-Wide Identification ofPlants (Basel, Switzerland) · 2024Article
- Molecular Links between Flowering and Abiotic Stress Response: A Focus onPlants (Basel, Switzerland) · 2023Review
- AlignStatPlot: An R package and online tool for robust sequence alignment statistics and innovative visualization of big data.PloS one · 2023Article
- Article
- Fine mapping and cloning of the major seed protein quantitative trait loci on soybean chromosome 20.The Plant journal : for cell and molecular biology · 2022Article
- Structural and functional analysis of CCT family genes in pigeonpea.Molecular biology reports · 2022Article
- Exploring theFrontiers in plant science · 2022Article
- Genome-wide identification of CCT genes in wheat (Triticum aestivum L.) and their expression analysis during vernalization.PloS one · 2022Article
- The SvFUL2 transcription factor is required for inflorescence determinacy and timely flowering in Setaria viridis.Plant physiology · 2021Article
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Authors and funding
12 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
CCT domain-containing genes generally control flowering in plants. Currently, only six of the 41 CCT family genes have been confirmed to control flowering in rice. To efficiently identify more heading date-related genes from the CCT family, we compared the positions of heading date QTLs and CCT genes and found that 25 CCT family genes were located in the QTL regions. Association mapping showed that a total of 19 CCT family genes were associated with the heading date. Five of the seven associated genes within QTL regions and two of four associated genes outside of the QTL regions were confirmed to regulate heading date by transformation. None of the seven non-associated genes outside of the QTL regions regulates heading date. Obviously, combination of candidate gene-based association mapping with linkage analysis could improve the identification of functional genes. Three novel CCT family genes, including one non-associated (OsCCT01) and two associated genes (OsCCT11 and OsCCT19) regulated the heading date. The overexpression of OsCCT01 delayed flowering through suppressing the expression of Ehd1, Hd3a and RFT1 under both long day and short day conditions. Potential functions in regulating heading date of some untested CCT family genes were discussed.
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