Evidence map›Paper›PMID 25561800›Full record

ArticleWorld journal of gastroenterology2014

Comparative study of mutations in SNP loci of K-RAS, hMLH1 and hMSH2 genes in neoplastic intestinal polyps and colorectal cancer.

Zhi-Hui Yan, Li-Hong Cui, Xiao-Hui Wang, Chao Li, Xing He

Open access · hybridAbstract read
In one paragraph

Article in World journal of gastroenterology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Zhi-Hui YanZhi-Hui Yan, Li-Hong Cui, Xiao-Hui Wang, Chao Li, Xing He, Department of Gastroenterology, Navy General Hospital of PLA, Beijing 100048, China.
Li-Hong CuiZhi-Hui Yan, Li-Hong Cui, Xiao-Hui Wang, Chao Li, Xing He, Department of Gastroenterology, Navy General Hospital of PLA, Beijing 100048, China.
Xiao-Hui WangZhi-Hui Yan, Li-Hong Cui, Xiao-Hui Wang, Chao Li, Xing He, Department of Gastroenterology, Navy General Hospital of PLA, Beijing 100048, China.
Chao LiZhi-Hui Yan, Li-Hong Cui, Xiao-Hui Wang, Chao Li, Xing He, Department of Gastroenterology, Navy General Hospital of PLA, Beijing 100048, China.
Xing HeZhi-Hui Yan, Li-Hong Cui, Xiao-Hui Wang, Chao Li, Xing He, Department of Gastroenterology, Navy General Hospital of PLA, Beijing 100048, China.
PLA Navy General Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo clarify the molecular mechanism involved in pathogenesis of colorectal cancer as well as clinical significance of genetic analysis of histological samples.

methodsA total of 480 blood and tissue specimens were collected in our hospital from January 2011 to October 2012. In the observation group, there were 120 blood specimens and 120 intestinal tract tissue specimens collected from patients with neoplastic intestinal polyps. In the control group I there were 80 blood specimens and 80 intestinal tract tissue specimens collected from patients with colorectal cancer. In the control group II there were 40 blood specimens and 40 intestinal tract tissue specimens collected from healthy individuals. The gene segments were amplified using PCR and DNA gel electrophoresis along with DNA sequence analysis were employed for the detection of the following single nucleotide polymorphisms (SNPs): K-RAS codons 12 and 13; hMLH1 (human mutS homolog 1) gene missense mutation at Va1384Asp; hMSH2 (human mutS homolog 2) gene missense mutation at 2783C/A.

resultsThe mutation rate of the SNP at Va1384Asp locus of the hMLH1 gene from blood and tissue specimens in the observation group showed no statistical difference from those in the control group I. The mutation rates of SNPs in codons 12 and 13 of K-RAS and at 2783C/A locus of the hMSH2 gene were significantly lower in the observation group than in the control group I (χ(2) = 15.476, 29.670, 10.811, 16.618, 33.538, 7.898, P < 0.05). The mutation rate of SNP at Va1384Asp locus of the hMLH1 gene was significantly higher in the observation group when compared to the control group II (χ(2) = 10.486, 4.876, P < 0.05). The mutation rates of SNPs in codons 12 and 13 of K-RAS and at 2783C/A locus of the hMSH2 gene did not show any statistical difference from those in the control group II.

conclusionThere may be important clinical significance and relevance between neoplastic intestinal polyps and colorectal cancer in terms of the mechanisms involved in the pathogenesis.

Indexed as

Mutation, MissensePolymorphism, Single NucleotideAdaptor Proteins, Signal TransducingAdultAgedCase-Control StudiesCodonColonic PolypsColorectal NeoplasmsDNA Mutational AnalysisFemaleGenetic Predisposition to DiseaseHumansMaleMiddle AgedMutL Protein Homolog 1Adaptor Proteins, Signal TransducingCodonKRAS protein, humanMLH1 protein, humanMSH2 protein, humanMutL Protein Homolog 1MutS Homolog 2 ProteinNuclear ProteinsProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)ras ProteinsColorectal cancerhMLH1hMSH2K-RASNeoplastic intestinal polypSingle nucleotide polymorphisms

Identifiers

PMID25561800
PMCPMC4277970
OpenAlexW1999322027

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.