Evidence map›Paper›PMID 25561705›Full record

ArticleInfection and immunity2015

Comparative proteomic analysis reveals activation of mucosal innate immune signaling pathways during cholera.

Crystal N Ellis, Regina C LaRocque, Taher Uddin, Bryan Krastins, Leslie M Mayo-Smith, David Sarracino, Elinor K Karlsson, Atiqur Rahman, Tahmina Shirin, Taufiqur R Bhuiyan and 6 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Infection and immunity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Frontiers in medicine · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Microbiota-Associated Biofilm Regulation Leads toFrontiers in cellular and infection microbiology · 2022
    Article
  13. Article
  14. Correlates of Protection for Cholera.The Journal of infectious diseases · 2021
    Article
  15. Article
  16. Systemic, Mucosal, and Memory Immune Responses following Cholera.Tropical medicine and infectious disease · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Crystal N EllisDivision of Infectious Diseases, Massachusetts General Hospital, Boston, Massachusetts, USA Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA cnellis@mgh.harvard.edu jbharris@mgh.harvard.edu.
Regina C LaRocqueDivision of Infectious Diseases, Massachusetts General Hospital, Boston, Massachusetts, USA Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA.
Taher UddinInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Bryan KrastinsThermoFischer Scientific, Biomarker Research in Mass Spectrometry, Cambridge, Massachusetts, USA.
Leslie M Mayo-SmithDivision of Infectious Diseases, Massachusetts General Hospital, Boston, Massachusetts, USA.
David SarracinoThermoFischer Scientific, Biomarker Research in Mass Spectrometry, Cambridge, Massachusetts, USA.
Elinor K KarlssonCenter for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USA Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Atiqur RahmanInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Tahmina ShirinInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Taufiqur R BhuiyanInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Fahima ChowdhuryInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Ashraful Islam KhanInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Edward T RyanDivision of Infectious Diseases, Massachusetts General Hospital, Boston, Massachusetts, USA Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, USA.
Stephen B CalderwoodDivision of Infectious Diseases, Massachusetts General Hospital, Boston, Massachusetts, USA Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA Department of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts, USA.
Firdausi QadriInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Jason B HarrisDivision of Infectious Diseases, Massachusetts General Hospital, Boston, Massachusetts, USA Department of Pediatrics, Harvard Medical School, Boston, Massachusetts, USA cnellis@mgh.harvard.edu jbharris@mgh.harvard.edu.
International Centre for Diarrhoeal Disease Research · BDHarvard University · USMassachusetts General Hospital · USThermo Fisher Scientific (United States) · USBroad Institute · US

Funding

Immune Responses to Vibrio cholerae infection and vaccination in HaitiR01AI099243 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI HARRIS, JASON B, IVERS, LOUISE C. · 2012 to 2022
$7.9M
Protecutive immunity to human cholera in BangladeshU01AI058935 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI CALDERWOOD, STEPHEN B., RYAN, EDWARD T. · 2003 to 2014
$7.8M
Training program in vaccine development and public healthD43TW005572 · FIC · MASSACHUSETTS GENERAL HOSPITAL · PI QADRI, FIRDAUSI, RYAN, EDWARD T. · 2000 to 2025
$5.4M
O-Specific Polysaccharide Responses and CholeraR37AI106878 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Edward T. Ryan · 2020 to 2026
$5.1M
Innate and early B cell responses to V. choleraeR01AI103055 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI HARRIS, JASON B · 2014 to 2018
$3.9M
O-Specific Polysaccharide Responses and CholeraR01AI106878 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI RYAN, EDWARD T. · 2014 to 2018
$3.7M
O-Specific Polysaccharide Responses and CholeraR56AI106878 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI RYAN, EDWARD T. · 2013 to 2020
$843k
FIC NIH HHS D43 TW005572FIC NIH HHS TW005572NIAID NIH HHS AI058935NIAID NIH HHS AI106878NIAID NIH HHS R01 AI099243NIAID NIH HHS R01 AI103055NIAID NIH HHS R01 AI106878NIAID NIH HHS R37 AI106878NIAID NIH HHS R56 AI106878NIAID NIH HHS U01 AI058935
6 · The paper itself

Abstract

Vibrio cholerae O1 is a major cause of acute watery diarrhea in over 50 countries. Evidence suggests that V. cholerae O1 may activate inflammatory pathways, and a recent study of a Bangladeshi population showed that variants in innate immune genes play a role in mediating susceptibility to cholera. We analyzed human proteins present in the small intestine of patients infected with V. cholerae O1 to characterize the host response to this pathogen. We collected duodenal biopsy specimens from patients with acute cholera after stabilization and again 30 days after initial presentation. Peptides extracted from biopsy specimens were sequenced and quantified using label-free mass spectrometry and SEQUEST. Twenty-seven host proteins were differentially abundant between the acute and convalescent stages of infection; the majority of these have known roles in innate defense, cytokine production, and apoptosis. Immunostaining confirmed that two proteins, WARS and S100A8, were more abundant in lamina propria cells during the acute stage of cholera. Analysis of the differentially abundant proteins revealed the activation of key regulators of inflammation by the innate immune system, including Toll-like receptor 4, nuclear factor kappa-light-chain-enhancer of activated B cells, mitogen-activated protein kinases, and caspase-dependent inflammasomes. Interleukin-12β (IL-12β) was a regulator of several proteins that were activated during cholera, and we confirmed that IL-12β was produced by lymphocytes recovered from duodenal biopsy specimens of cholera patients. Our study shows that a broad inflammatory response is generated in the gut early after onset of cholera, which may be critical in the development of long-term mucosal immunity against V. cholerae O1.

Indexed as

ConvalescenceImmunity, MucosalAcute DiseaseApoptosisBiopsyCalgranulin ACholeraDuodenumGene Expression ProfilingGene Expression RegulationHost-Pathogen InteractionsHumansInflammasomesInterleukin-12 Subunit p40ProteomicsSignal TransductionCalgranulin AInflammasomesInterleukin-12 Subunit p40TLR4 protein, humanToll-Like Receptor 4Tryptophan-tRNA LigaseWARS1 protein, human

Identifiers

PMID25561705
PMCPMC4333457
OpenAlexW2127427046

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.