Evidence map›Paper›PMID 25561557›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Flies expand the repertoire of protein structures that bind ice.

Koli Basu, Laurie A Graham, Robert L Campbell, Peter L Davies

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 33 citations in OpenAlex.

  1. On the engulfment of antifreeze proteins by ice.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Modeling repetitive, non-globular proteins.Protein science : a publication of the Protein Society · 2016
    Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Koli BasuProtein Function Discovery Group and Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, Canada K7L 3N6.
Laurie A GrahamProtein Function Discovery Group and Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, Canada K7L 3N6.
Robert L CampbellProtein Function Discovery Group and Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, Canada K7L 3N6.
Peter L DaviesProtein Function Discovery Group and Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, Canada K7L 3N6 peter.davies@queensu.ca.
The Ohio State University · USQueen's University · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

An antifreeze protein (AFP) with no known homologs has been identified in Lake Ontario midges (Chironomidae). The midge AFP is expressed as a family of isoforms at low levels in adults, which emerge from fresh water in spring before the threat of freezing temperatures has passed. The 9.1-kDa major isoform derived from a preproprotein precursor is glycosylated and has a 10-residue tandem repeating sequence xxCxGxYCxG, with regularly spaced cysteines, glycines, and tyrosines comprising one-half its 79 residues. Modeling and molecular dynamics predict a tightly wound left-handed solenoid fold in which the cysteines form a disulfide core to brace each of the eight 10-residue coils. The solenoid is reinforced by intrachain hydrogen bonds, side-chain salt bridges, and a row of seven stacked tyrosines on the hydrophobic side that forms the putative ice-binding site. A disulfide core is also a feature of the similar-sized beetle AFP that is a β-helix with seven 12-residue coils and a comparable circular dichroism spectrum. The midge and beetle AFPs are not homologous and their ice-binding sites are radically different, with the latter comprising two parallel arrays of outward-pointing threonines. However, their structural similarities is an amazing example of convergent evolution in different orders of insects to cope with change to a colder climate and provide confirmation about the physical features needed for a protein to bind ice.

Indexed as

IceAmino Acid SequenceAnimalsAntifreeze ProteinsDipteraGlycosylationMolecular Sequence DataProtein ConformationSequence Homology, Amino AcidTandem Mass SpectrometryAntifreeze ProteinsIceantifreeze proteinconvergent evolutiondisulfide-richmidgesolenoid

Identifiers

PMID25561557
PMCPMC4311821
OpenAlexW2168205442

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.