Evidence map›Paper›PMID 25561231›Full record

ArticleInternational journal of molecular sciences2014

Improvement of the fluorescence intensity during a flow cytometric analysis for rice protoplasts by localization of a green fluorescent protein into chloroplasts.

Min Kyoung You, Sun-Hyung Lim, Min-Jin Kim, Ye Sol Jeong, Mi-Gi Lee, Sun-Hwa Ha

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.International journal of molecular sciences · 2022
    Article
  4. Article
  5. Article
  6. Enhanced Expression of QTLInternational journal of molecular sciences · 2019
    Article
  7. International journal of molecular sciences · 2018
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Min Kyoung YouNational Academy of Agricultural Science, Rural Development Administration, Jeonju 560-500, Korea. minkyou@khu.ac.kr.
Sun-Hyung LimNational Academy of Agricultural Science, Rural Development Administration, Jeonju 560-500, Korea. limsh2@korea.kr.
Min-Jin KimNational Academy of Agricultural Science, Rural Development Administration, Jeonju 560-500, Korea. sweetwindy@ajou.ac.kr.
Ye Sol JeongNational Academy of Agricultural Science, Rural Development Administration, Jeonju 560-500, Korea. yesol@korea.ac.kr.
Mi-Gi LeeGyeonggi Bio-Center, Gyeonggi Institute of Science & Technology Promotion, Suwon 443-270, Korea. migi@gstep.re.kr.
Sun-Hwa HaGraduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Korea. sunhwa@khu.ac.kr.
Rural Development Administration · KRKyung Hee University · KRGyeonggi Research Institute · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protoplasts have been a useful unicellular system for various molecular biological analyses based on transient expression and single cell analysis using fluorescence-activated cell sorting (FACS), widely used as a powerful method in functional genomics. Despite the versatility of these methods, some limits based on low fluorescence intensity of a flow cytometric analysis (FCA) using protoplasts have been reported. In this study, the chloroplast targeting of fluorescent proteins (FPs) led to an eight-fold increase in fluorescence intensity and a 4.5-fold increase of transfection ratio from 14.7% to 65.7% as compared with their targeting into the cytoplasm. Moreover, the plot data of FCA shows that 83.3% of the K-sGFP population is under the threshold level, regarded as a non-transgenic population with background signals, while 65.7% of the K-sGFP population is spread on overall intervals. To investigate the reason underlying this finding, mRNA/protein levels and transfection efficiency were analyzed, and results suggest that mRNA/protein levels and transfection ratio are not much different between K-sGFP and KR-sGFP. From those results, we hypothesized that the difference of fluorescence intensity is not only derived from cellular events such as molecular level or transfection efficiency. Taken together, we suggest that the translocation of FPs into chloroplasts contributes to the improvement of fluorescence intensity in FCA and, apparently, plays an important role in minimizing the loss of the transfected population. Our study could be usefully applicable for highly sensitive FACS and FCA-investigations of green tissue.

Indexed as

ChloroplastsCytoplasmFlow CytometryGreen Fluorescent ProteinsOryzaProtoplastsRNA, MessengerGreen Fluorescent ProteinsRNA, Messenger

Identifiers

PMID25561231
PMCPMC4307275
OpenAlexW2142594248

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.