Evidence map›Paper›PMID 25561180›Full record

ArticleNature2015

Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations.

Kai Deng, Mihaela Pertea, Anthony Rongvaux, Leyao Wang, Christine M Durand, Gabriel Ghiaur, Jun Lai, Holly L McHugh, Haiping Hao, Hao Zhang and 13 more

2 registry-linked trialsAbstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 346 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
346citing papers in PubMed, 1 pooled it
40.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03980665 phase1unknown statusnot on this mapstarted 2019, after this paper: background citation

The Effect of Arsenic Trioxide on Eliminating HIV-1 Reservoir Combined With cART

TypeinterventionalSponsorGuangzhou 8th People's HospitalRan2019 to 2025Enrolled20ConditionsHIV/AIDSArmsArsenic Trioxide
NCT04263207 suspendednot on this mapstarted 2020, after this paper: background citation

Observational Study for the Evaluation of the Role of HIV-1 Tat Protein and Anti-Tat Immune Response in Peripheral Blood HIV Reservoir Dynamics

TypeobservationalSponsorBarbara Ensoli, MD, PhDRan2020 to 2025Enrolled100ConditionsHIV/AIDSArmsNo intervention
3 · Its place in the literature

Who cites it

346 citing papers in PubMed, 1 synthesis or guideline pooled it, 496 citations in OpenAlex.

  1. Pooled it
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  7. Review
  8. Article
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  11. HIV Virion Capturing Liposomes for Therapeutic Vaccination.bioRxiv : the preprint server for biology · 2025
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  17. Observational
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286 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 1 country.

Kai DengDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Mihaela Pertea1] Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [2] Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Anthony RongvauxDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Leyao WangDepartment of Chronic Disease Epidemiology, Yale School of Public Health, New Haven, Connecticut 06510, USA.
Christine M DurandDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Gabriel GhiaurDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Jun LaiDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Holly L McHughDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Haiping HaoDeep Sequencing and Microarray Core, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Hao ZhangDepartment of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205, USA.
Joseph B MargolickDepartment of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205, USA.
Cagan GurerRegeneron Pharmaceuticals Inc., Tarrytown, New York 10591, USA.
Andrew J MurphyRegeneron Pharmaceuticals Inc., Tarrytown, New York 10591, USA.
David M ValenzuelaRegeneron Pharmaceuticals Inc., Tarrytown, New York 10591, USA.
George D YancopoulosRegeneron Pharmaceuticals Inc., Tarrytown, New York 10591, USA.
Steven G DeeksDepartment of Medicine, University of California, San Francisco, San Francisco, California 94110, USA.
Till StrowigDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Priti KumarDepartment of Medicine, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Janet D SilicianoDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Steven L Salzberg1] Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [2] Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Richard A Flavell1] Department of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06510, USA [2] Howard Hughes Medical Institute, New Haven, Connecticut 06510, USA.
Liang ShanDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Robert F Siliciano1] Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA [2] Howard Hughes Medical Institute, Baltimore, Maryland 21205, USA.
Johns Hopkins University · USYale University · USRegeneron (United States) · USJohns Hopkins Medicine · USHoward Hughes Medical Institute · USUniversity of California, San Francisco · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Vaccine Response and Immunotherapeutics SWGP30AI094189 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Richard E. Chaisson · 2012 to 2026
$67.0M
Using NK Cells to eliminate the latent HIV reservoirU19AI096113 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LUCIW, PAUL · 2011 to 2015
$39.5M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHACKER, TIMOTHY W · 2011 to 2015
$29.5M
INTERDISCIPLINARY IMMUNOLOGY TRAINING PROGRAMT32AI007019 · NIAID · YALE UNIVERSITY · PI Carrie L. Lucas, David G. Schatz · 1985 to 2026
$14.4M
TRAINING PROGRAM IN HEMATOLOGYT32HL007525 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI ROBERT A BRODSKY · 1985 to 2026
$6.2M
LATENT VIRAL RESERVOIRS IN HIV1 INFECTIONR01AI043222 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SILICIANO, ROBERT F · 1998 to 2013
$3.5M
SIGNIFICANCE OF LOW LEVEL VIREMIA IN PATIENTS ON HAARTR01AI051178 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SILICIANO, ROBERT F · 2002 to 2006
$1.8M
Bone Marrow Microenvironmental Expression of Cytochrome P450 EnzymesK08HL127269 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI GHIAUR, GABRIEL · 2015 to 2019
$823k
Developing humanized mouse models for the study of HIV-1 latency and viral eradicationK99AI125065 · NIAID · YALE UNIVERSITY · PI SHAN, LIANG · 2016 to 2016
$133k
Howard Hughes Medical InstituteNHLBI NIH HHS K08 HL127269NHLBI NIH HHS T32 HL007525NIAID NIH HHS 1U19AI096109NIAID NIH HHS AI096113NIAID NIH HHS K99 AI125065NIAID NIH HHS P30 AI027763NIAID NIH HHS P30 AI094189NIAID NIH HHS P30AI094189NIAID NIH HHS R01 AI043222NIAID NIH HHS R01 AI051178NIAID NIH HHS T32 AI007019NIAID NIH HHS T32 AI07019NIAID NIH HHS U19 AI096109NIAID NIH HHS U19 AI096113
6 · The paper itself

Abstract

Despite antiretroviral therapy (ART), human immunodeficiency virus (HIV)-1 persists in a stable latent reservoir, primarily in resting memory CD4(+) T cells. This reservoir presents a major barrier to the cure of HIV-1 infection. To purge the reservoir, pharmacological reactivation of latent HIV-1 has been proposed and tested both in vitro and in vivo. A key remaining question is whether virus-specific immune mechanisms, including cytotoxic T lymphocytes (CTLs), can clear infected cells in ART-treated patients after latency is reversed. Here we show that there is a striking all or none pattern for CTL escape mutations in HIV-1 Gag epitopes. Unless ART is started early, the vast majority (>98%) of latent viruses carry CTL escape mutations that render infected cells insensitive to CTLs directed at common epitopes. To solve this problem, we identified CTLs that could recognize epitopes from latent HIV-1 that were unmutated in every chronically infected patient tested. Upon stimulation, these CTLs eliminated target cells infected with autologous virus derived from the latent reservoir, both in vitro and in patient-derived humanized mice. The predominance of CTL-resistant viruses in the latent reservoir poses a major challenge to viral eradication. Our results demonstrate that chronically infected patients retain a broad-spectrum viral-specific CTL response and that appropriate boosting of this response may be required for the elimination of the latent reservoir.

Indexed as

Acute DiseaseAnimalsAnti-HIV AgentsCD4-Positive T-LymphocytesChronic DiseaseEpitopes, T-LymphocyteFemalegag Gene Products, Human Immunodeficiency VirusGenes, DominantGenes, ViralHIV-1HIV InfectionsHumansMaleMiceMutationAnti-HIV AgentsEpitopes, T-Lymphocytegag Gene Products, Human Immunodeficiency VirusRNA, Viral

Identifiers

PMID25561180
PMCPMC4406054
OpenAlexW2075106941

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.