Evidence map›Paper›PMID 25559091›Full record

SynthesisAnnals of neurology2015

Protective variant for hippocampal atrophy identified by whole exome sequencing.

Kwangsik Nho, Sungeun Kim, Shannon L Risacher, Li Shen, Jason J Corneveaux, Shanker Swaminathan, Hai Lin, Vijay K Ramanan, Yunlong Liu, Tatiana M Foroud and 28 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Annals of neurology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 53 citations in OpenAlex.

  1. Trial
  2. Article
  3. The first 25 years of the Northwestern University SuperAging Program.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Untreated PKU patients without intellectual disability:Molecular genetics and metabolism reports · 2021
    Article
  9. Review
  10. Article
  11. Article
  12. Genome-wide transcriptome analysis identifies novel dysregulated genes implicated in Alzheimer's pathology.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2020
    Article
  13. Brain-wide structural connectivity alterations under the control of Alzheimer risk genes.International journal of computational biology and drug design · 2020
    Article
  14. Brain Imaging Genomics: Integrated Analysis and Machine Learning.Proceedings of the IEEE. Institute of Electrical and Electronics Engineers · 2020
    Article
  15. Article
  16. Article
  17. Aging and disease · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

38 authors at 14 institutions in 7 countries.

Kwangsik NhoCenter for Neuroimaging, Department of Radiology and Imaging Sciences, Indiana University School of Medicine, Indianapolis, IN; Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN.
Sungeun Kim
Shannon L Risacher
Li Shen
Jason J Corneveaux
Shanker Swaminathan
Hai Lin
Vijay K Ramanan
Yunlong Liu
Tatiana M Foroud
Mark H Inlow
Ashley L Siniard
Rebecca A Reiman
Paul S Aisen
Ronald C Petersen
Robert C Green
Clifford R Jack
Michael W Weiner
Clinton T Baldwin
Kathryn L Lunetta
Lindsay A Farrer
MIRAGE (Multi-Institutional Research on Alzheimer Genetic Epidemiology) Study
Simon J Furney
Simon Lovestone
Andrew Simmons
Patrizia Mecocci
Bruno Vellas
Magda Tsolaki
Iwona Kloszewska
Hilkka Soininen
AddNeuroMed Consortium
Brenna C McDonald
Martin R Farlow
Bernardino Ghetti
Indiana Memory and Aging Study
Matthew J Huentelman
Andrew J Saykin
Alzheimer's Disease Neuroimaging Initiative
Indiana University School of MedicineTranslational Genomics Research Institute · USBoston University · USNational Health Service · GBMayo Clinic in Arizona · USAristotle University of Thessaloniki · GRBrigham and Women's Hospital · USMedical University of Lodz · PLRose–Hulman Institute of Technology · USSan Francisco VA Medical Center · USUniversité Toulouse III - Paul Sabatier · FRUniversity of California San Diego · USUniversity of Eastern Finland · FIUniversity of Perugia · IT

Funding

Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
Alzheimer's Disease Genetics ConsortiumU01AG032984 · NIA · UNIVERSITY OF PENNSYLVANIA · PI SCHELLENBERG, GERARD DAVID · 2009 to 2024
$60.4M
Research Education ComponentP30AG010133 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 1991 to 2020
$37.3M
Neuropathology CoreP30AG013846 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI KOWALL, NEIL W. · 1996 to 2020
$29.1M
Quality Assurance and Quality Control Project Management: Improving Submissions and Study Conduct in the Human Subjects Research Prior Approval ProcessUL1TR002529 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOE, SHARON M, WIEHE, SARAH ELIZABETH · 2018 to 2022
$27.2M
Amyloid Imaging, VMCI, and Analysis for ADNIRC2AG036535 · NIA · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WEINER, MICHAEL W · 2009 to 2010
$23.8M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
GENETIC EPIDEMIOLOGICAL STUDIES OF ALZHEIMERS DISEASER01AG009029 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FARRER, LINDSAY A. · 1991 to 2007
$14.7M
Memory Circuitry in MCI and Early Alzheimer’s Disease Prodrome: Molecular DriversR01AG019771 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 2001 to 2021
$6.9M
Multi-ethnic genome-wide Alzheimer's association studyR01AG025259 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FARRER, LINDSAY A. · 2006 to 2010
$2.6M
Neural Mechanisms of Chemotherapy-Induced Cognitive DisorderR01CA101318 · NCI · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 2003 to 2007
$2.0M
NCATS NIH HHS UL1 TR001108NCI NIH HHS R01 CA101318NIA NIH HHS AG041232NIA NIH HHS P30 AG010133NIA NIH HHS P30 AG013846NIA NIH HHS P30 AG10133NIA NIH HHS P30 AG13846NIA NIH HHS R01 AG009029NIA NIH HHS R01 AG019771NIA NIH HHS R01 AG025259NIA NIH HHS R01 AG041232NIA NIH HHS R01 AG09029NIA NIH HHS R01 AG19771NIA NIH HHS R01 AG25259NIA NIH HHS RC2 AG036535NIA NIH HHS U01 AG024904NIA NIH HHS U01 AG032984NIA NIH HHS U24 AG021886NIA NIH HHS U24 AG21886NINDS NIH HHS R01 NS059873NINDS NIH HHS R01NS059873NLM NIH HHS 4R00 LM011384-02NLM NIH HHS R00 LM011384NLM NIH HHS R01 LM011360PHS HHS IIS-1117335
6 · The paper itself

Abstract

We used whole-exome sequencing to identify variants other than APOE associated with the rate of hippocampal atrophy in amnestic mild cognitive impairment. An in-silico predicted missense variant in REST (rs3796529) was found exclusively in subjects with slow hippocampal volume loss and validated using unbiased whole-brain analysis and meta-analysis across 5 independent cohorts. REST is a master regulator of neurogenesis and neuronal differentiation that has not been previously implicated in Alzheimer's disease. These findings nominate REST and its functional pathways as protective and illustrate the potential of combining next-generation sequencing with neuroimaging to discover novel disease mechanisms and potential therapeutic targets.

Indexed as

Disease ProgressionAgedAlzheimer DiseaseAmnesiaAtrophyCognitive DysfunctionExomeHippocampusHumansMaleMutation, MissenseProtective FactorsRE1-Silencing Transcription FactorRepressor ProteinsSequence Analysis, DNARE1-Silencing Transcription FactorRepressor Proteins

Identifiers

PMID25559091
PMCPMC4387567
OpenAlexW1578688024

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.