Evidence map›Paper›PMID 25559071›Full record

ReviewVirus research2015

Picornavirus RNA polyadenylation by 3D(pol), the viral RNA-dependent RNA polymerase.

Brian J Kempf, David J Barton

Abstract readReview
In one paragraph

Review in Virus research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. [Viral hepatitis A to E: prevalence, pathogen characteristics, and pathogenesis].Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz · 2022
    Review
  8. Enterovirus and Encephalitis.Frontiers in microbiology · 2020
    Review
  9. RNA regulatory processes in RNA virus biology.Wiley interdisciplinary reviews. RNA · 2019
    Review
  10. Article
  11. Translational Control in Virus-Infected Cells.Cold Spring Harbor perspectives in biology · 2019
    Review
  12. Emergency Services of Viral RNAs: Repair and Remodeling.Microbiology and molecular biology reviews : MMBR · 2018
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Brian J KempfDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, United States.
David J BartonDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, United States. Electronic address: david.barton@ucdenver.edu.

Funding

Enterovirus RNA Translation and ReplicationR01AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 1998 to 2024
$7.2M
Enterovirus RNA Translation and ReplicationR56AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 2009 to 2009
$341k
Enterovirus RNA Translation and ReplicationR21AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 2003 to 2003
$268k
NIAID NIH HHS AI042189NIAID NIH HHS R01 AI042189NIAID NIH HHS R21 AI042189NIAID NIH HHS R56 AI042189
6 · The paper itself

Abstract

Poly(A) tails are functionally important features of all picornavirus RNA genomes. Some viruses have genomes with relatively short poly(A) tails (encephalomyocarditis virus) whereas others have genomes with longer poly(A) tails (polioviruses and rhinoviruses). Here we review the polyadenylation of picornavirus RNA as it relates to the structure and function of 3D(pol). Poliovirus 3D(pol) uses template-dependent reiterative transcription mechanisms as it replicates the poly(A) tails of viral RNA (Steil et al., 2010). These mechanisms are analogous to those involved in the polyadenylation of vesicular stomatitis virus and influenza virus mRNAs. 3D(pol) residues intimately associated with viral RNA templates and products regulate the size of poly(A) tails in viral RNA (Kempf et al., 2013). Consistent with their ancient evolutionary origins, picornavirus 3D(pol) and telomerase reverse transcriptase (TERT) share structural and functional features. Structurally, both 3D(pol) and TERT assume a "right-hand" conformation with thumb, palm and fingers domains encircling templates and products. Functionally, both 3D(pol) and TERT use template-dependent reiterative transcription mechanisms to synthesize repetitive sequences: poly(A) tails in the case of picornavirus RNA genomes and DNA telomeres in the case of eukaryotic chromosomes. Thus, picornaviruses and their eukaryotic hosts (humans and animals) maintain the 3' ends of their respective genomes via evolutionarily related mechanisms.

Indexed as

PolyadenylationModels, MolecularPicornaviridaeProtein ConformationRNA-Dependent RNA PolymeraseRNA, ViralTranscription, GeneticRNA-Dependent RNA PolymeraseRNA, Viral3D(pol)PicornaviralesPicornaviridaePolyadenylationReiterative transcriptionRNA-dependent RNA polymerase

Identifiers

PMID25559071
PMCPMC4801031

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.