Evidence map›Paper›PMID 25559034›Full record

ArticleBMC genomics2014

MicroRNA and messenger RNA profiling reveals new biomarkers and mechanisms for RDX induced neurotoxicity.

Youping Deng, Junmei Ai, Xin Guan, Zhaohui Wang, Bin Yan, Daqin Zhang, Chang Liu, Mitch S Wilbanks, Barbara Lynn Escalon, Sharon A Meyers and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 46 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 10 institutions in 3 countries.

Youping Deng
Junmei Ai
Xin Guan
Zhaohui Wang
Bin Yan
Daqin Zhang
Chang Liu
Mitch S Wilbanks
Barbara Lynn Escalon
Sharon A Meyers
Mary Qu Yang
Edward J Perkins
Rush University Medical Center · USU.S. Army Engineer Research and Development Center · USBristol Bay Native Association · USSoochow University · CNUnited States Army · USUniversity of Arkansas for Medical Sciences · USUniversity of Hong Kong · HKUniversity of Louisiana at Monroe · USWuhan University of Science and Technology · CNWuhan University of Technology · CN

Funding

Developing integrative approaches for identifying disease-causing genes and dysfunctional networksR15GM114739 · NIGMS · UNIVERSITY OF ARKANSAS AT LITTLE ROCK · PI YANG, MARY · 2015 to 2015
$374k
EARLY DETECTION OF LUNG CANCER USING METABOLOMIC LIPID PROFILINGR21CA164764 · NCI · RUSH UNIVERSITY MEDICAL CENTER · PI DENG, YOUPING · 2013 to 2014
$360k
NCI NIH HHS R21CA164764NIGMS NIH HHS 5P20GM10342913NIGMS NIH HHS R15 GM114739
6 · The paper itself

Abstract

backgroundRDX is a well-known pollutant to induce neurotoxicity. MicroRNAs (miRNA) and messenger RNA (mRNA) profiles are useful tools for toxicogenomics studies. It is worthy to integrate MiRNA and mRNA expression data to understand RDX-induced neurotoxicity.

resultsRats were treated with or without RDX for 48 h. Both miRNA and mRNA profiles were conducted using brain tissues. Nine miRNAs were significantly regulated by RDX. Of these, 6 and 3 miRNAs were up- and down-regulated respectively. The putative target genes of RDX-regulated miRNAs were highly nervous system function genes and pathways enriched. Fifteen differentially genes altered by RDX from mRNA profiles were the putative targets of regulated miRNAs. The induction of miR-71, miR-27ab, miR-98, and miR-135a expression by RDX, could reduce the expression of the genes POLE4, C5ORF13, SULF1 and ROCK2, and eventually induce neurotoxicity. Over-expression of miR-27ab, or reduction of the expression of unknown miRNAs by RDX, could up-regulate HMGCR expression and contribute to neurotoxicity. RDX regulated immune and inflammation response miRNAs and genes could contribute to RDX- induced neurotoxicity and other toxicities as well as animal defending reaction response to RDX exposure.

conclusionsOur results demonstrate that integrating miRNA and mRNA profiles is valuable to indentify novel biomarkers and molecular mechanisms for RDX-induced neurological disorder and neurotoxicity.

Indexed as

Gene Expression ProfilingAnimalsBiomarkersBrainComputational BiologyEnvironmental PollutantsFemaleInflammationMicroRNAsNeurotoxicity SyndromesRats, Sprague-DawleyRNA, MessengerSignal TransductionTriazinesBiomarkerscycloniteEnvironmental PollutantsMicroRNAsRNA, MessengerTriazines

Identifiers

PMID25559034
PMCPMC4304176
OpenAlexW1916743370

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.