Evidence map›Paper›PMID 25559016›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2015

Influence of sex on genetic regulation of "drinking in the dark" alcohol consumption.

Lauren A Vanderlinden, Laura M Saba, Beth Bennett, Paula L Hoffman, Boris Tabakoff

Open access · greenAbstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. International journal of molecular sciences · 2022
    Article
  4. Transcriptome and metabolome changes induced by bitter melon (Journal of traditional and complementary medicine · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Voluntary exposure to a toxin: the genetic influence on ethanol consumption.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Article
  13. Estrogen-Dependent Upregulation ofFrontiers in genetics · 2018
    Article
  14. Article
  15. Article
  16. Genes and Alcohol Consumption: Studies with Mutant Mice.International review of neurobiology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Lauren A VanderlindenDepartment of Pharmaceutical Sciences, Skaggs School of Pharmacy & Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, 12850 E. Montview Blvd., Campus Box: C238, Aurora, CO, 80045, USA, lauren.vanderlinden@ucdenver.edu.
Laura M Saba
Beth Bennett
Paula L Hoffman
Boris Tabakoff
University of Colorado Anschutz Medical Campus · USUniversity of Montana · USUniversity of Colorado Boulder · US

Funding

The Heritable Transcriptome and AlcoholismR24AA013162 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI HOFFMAN, PAULA, SABA, LAURA MAREN · 2001 to 2021
$14.2M
Regulation of alcohol consumption by chromatin modificationU01AA016649 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI HOFFMAN, PAULA, TABAKOFF, BORIS · 2006 to 2013
$2.4M
NIAAA NIH HHS R24 AA013162NIAAA NIH HHS R24AA013162NIAAA NIH HHS U01 AA016649NIAAA NIH HHS U01AA16649
6 · The paper itself

Abstract

The ILSXISS (LXS) recombinant inbred (RI) panel of mice is a valuable resource for genetic mapping studies of complex traits, due to its genetic diversity and large number of strains. Male and female mice from this panel were used to investigate genetic influences on alcohol consumption in the "drinking in the dark" (DID) model. Male mice (38 strains) and female mice (36 strains) were given access to 20% ethanol during the early phase of their circadian dark cycle for four consecutive days. The first principal component of alcohol consumption measures on days 2, 3, and 4 was used as a phenotype (DID phenotype) to calculate QTLs, using a SNP marker set for the LXS RI panel. Five QTLs were identified, three of which included a significant genotype by sex interaction, i.e., a significant genotype effect in males and not females. To investigate candidate genes associated with the DID phenotype, data from brain microarray analysis (Affymetrix Mouse Exon 1.0 ST Arrays) of male LXS RI strains were combined with RNA-Seq data (mouse brain transcriptome reconstruction) from the parental ILS and ISS strains in order to identify expressed mouse brain transcripts. Candidate genes were determined based on common eQTL and DID phenotype QTL regions and correlation of transcript expression levels with the DID phenotype. The resulting candidate genes (in particular, Arntl/Bmal1) focused attention on the influence of circadian regulation on the variation in the DID phenotype in this population of mice.

Indexed as

DarknessPhenotypeAlcohol DrinkingAnimalsAryl Hydrocarbon Receptor Nuclear TranslocatorBase SequenceBrainCircadian RhythmFemaleGenetic Association StudiesGenotypeHigh-Throughput Nucleotide SequencingMaleMiceMice, Inbred StrainsMicroarray AnalysisArnt protein, mouseAryl Hydrocarbon Receptor Nuclear Translocator

Identifiers

PMID25559016
PMCPMC4306387
OpenAlexW1971347925

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.