Evidence map›Paper›PMID 25558071›Full record

ArticleThe Journal of antimicrobial chemotherapy2015

Dynamics of MDR Enterobacter cloacae outbreaks in a neonatal unit in Nepal: insights using wider sampling frames and next-generation sequencing.

N Stoesser, A E Sheppard, M Shakya, B Sthapit, S Thorson, A Giess, D Kelly, A J Pollard, T E A Peto, A S Walker and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Review
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  5. Article
  6. Article
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  9. Article
  10. Whole-genome analysis of carbapenem-resistantComputational and structural biotechnology journal · 2022
    Article
  11. Emergence of Neonatal Sepsis Caused by MCR-9- and NDM-1-Co-ProducingFrontiers in cellular and infection microbiology · 2022
    Article
  12. Class I integrons among multidrug resistantCaspian journal of internal medicine · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Spreading Patterns of NDM-ProducingAntimicrobial agents and chemotherapy · 2019
    Article
  18. Genomic epidemiology of multidrug-resistant Gram-negative organisms.Annals of the New York Academy of Sciences · 2019
    Review
  19. Carbapenem-ResistantFrontiers in microbiology · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

N StoesserNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK nicole.stoesser@ndm.ox.ac.uk.
A E SheppardNIHR Biomedical Research Centre, University of Oxford/Oxford University Hospitals NHS Trust, Oxford, UK.
M ShakyaDepartment of Paediatrics, Patan Hospital, Kathmandu, Nepal.
B SthapitDepartment of Paediatrics, Patan Hospital, Kathmandu, Nepal.
S ThorsonDepartment of Paediatrics, Patan Hospital, Kathmandu, Nepal.
A GiessNIHR Biomedical Research Centre, University of Oxford/Oxford University Hospitals NHS Trust, Oxford, UK.
D KellyNIHR Biomedical Research Centre, University of Oxford/Oxford University Hospitals NHS Trust, Oxford, UK Oxford Vaccine Group, Centre for Clinical Vaccinology and Tropical Medicine, University of Oxford, Oxford, UK.
A J PollardNIHR Biomedical Research Centre, University of Oxford/Oxford University Hospitals NHS Trust, Oxford, UK Oxford Vaccine Group, Centre for Clinical Vaccinology and Tropical Medicine, University of Oxford, Oxford, UK.
T E A PetoNIHR Biomedical Research Centre, University of Oxford/Oxford University Hospitals NHS Trust, Oxford, UK.
A S WalkerNIHR Biomedical Research Centre, University of Oxford/Oxford University Hospitals NHS Trust, Oxford, UK.
D W CrookNIHR Biomedical Research Centre, University of Oxford/Oxford University Hospitals NHS Trust, Oxford, UK.
Oxford BioMedica (United Kingdom) · GBPatan Hospital · NPUniversity of Oxford · GBOxford University Hospitals NHS Trust · GB

Funding

Department of Health G0800778Medical Research Council 087646/Z/08/ZMedical Research Council G0800778Wellcome Trust 098615
6 · The paper itself

Abstract

objectivesThere are limited data on Enterobacter cloacae outbreaks and fewer describing these in association with NDM-1. With whole-genome sequencing, we tested the hypothesis that a cluster of 16 E. cloacae bacteraemia cases in a Nepali neonatal unit represented a single clonal outbreak, using a wider set of epidemiologically unrelated clinical E. cloacae isolates for comparison.

methodsForty-three isolates were analysed, including 23 E. cloacae and 3 Citrobacter sp. isolates obtained from blood cultures from 16 neonates over a 3 month period. These were compared with two contemporaneous community-associated drug-resistant isolates from adults, a unit soap dispenser isolate and a set of historical invasive isolates (n=14) from the same geographical locality.

resultsThere were two clear neonatal outbreaks and one isolated case in the unit. One outbreak was associated with an NDM-1 plasmid also identified in a historical community-associated strain. The smaller, second outbreak was likely associated with a contaminated soap dispenser. The two community-acquired adult cases and three sets of historical hospital-associated neonatal isolates represented four additional genetic clusters.

conclusionsE. cloacae infections in this context represent several different transmission networks, operating at the community/hospital and host strain/plasmid levels. Wide sampling frames and high-resolution typing methods are needed to describe the complex molecular epidemiology of E. cloacae outbreaks, which is not appropriately reflected by routine susceptibility phenotypes. Soap dispensers may represent a reservoir for E. cloacae and bacterial strains and plasmids may persist in hospitals and in the community for long periods, sporadically being involved in outbreaks of disease.

Indexed as

Disease OutbreaksAdultBacteremiaBloodCluster AnalysisDisease Transmission, InfectiousDNA, BacterialEnterobacter cloacaeEnterobacteriaceae InfectionsEnvironmental MicrobiologyGenome, BacterialGenotypeHigh-Throughput Nucleotide SequencingHumansInfant, NewbornIntensive Care Units, NeonatalDNA, BacterialcarbapenemasesepidemiologyNDMwhole-genome sequencing

Identifiers

PMID25558071
PMCPMC4356206
OpenAlexW2159935018

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.