Evidence map›Paper›PMID 25556942›Full record

ArticleChemistry & biology2015

Target-based identification of whole-cell active inhibitors of biotin biosynthesis in Mycobacterium tuberculosis.

Sae Woong Park, Dominick E Casalena, Daniel J Wilson, Ran Dai, Partha P Nag, Feng Liu, Jim P Boyce, Joshua A Bittker, Stuart L Schreiber, Barry C Finzel and 2 more

Abstract read
In one paragraph

Article in Chemistry & biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. ScreeningOpen research Europe · 2025
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Tuberculosis Drug Discovery: A Decade of Hit Assessment for Defined Targets.Frontiers in cellular and infection microbiology · 2021
    Review
  13. The primary step of biotin synthesis in mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Sae Woong ParkDepartment of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065, USA.
Dominick E CasalenaThe Broad Institute Probe Development Center, Cambridge, MA 02142, USA.
Daniel J WilsonCenter for Drug Design, University of Minnesota, Minneapolis, MN 55455, USA.
Ran DaiDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.
Partha P NagThe Broad Institute Probe Development Center, Cambridge, MA 02142, USA.
Feng LiuDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.
Jim P BoyceDivision of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892-6604, USA.
Joshua A BittkerThe Broad Institute Probe Development Center, Cambridge, MA 02142, USA.
Stuart L SchreiberThe Broad Institute Probe Development Center, Cambridge, MA 02142, USA.
Barry C FinzelDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.
Dirk SchnappingerDepartment of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065, USA. Electronic address: dis2003@med.cornell.edu.
Courtney C AldrichCenter for Drug Design, University of Minnesota, Minneapolis, MN 55455, USA; Department of Medicinal Chemistry, University of Minnesota, Minneapolis, MN 55455, USA. Electronic address: aldri015@umn.edu.

Funding

User Driven ProjectU54HG005032 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SCHREIBER, STUART L · 2008 to 2013
$88.1M
Biotin synthesis and biotin ligation in MtbR01AI091790 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI SCHNAPPINGER, DIRK · 2011 to 2015
$3.0M
A Fluorescence Displacement Assay for the Biotin Biosynthetic Enzyme BioAR03MH096537 · NIMH · UNIVERSITY OF MINNESOTA · PI ALDRICH, COURTNEY C · 2012 to 2013
$74k
NHGRI NIH HHS 1 U54 HG005032-1NHGRI NIH HHS U54 HG005032NIAID NIH HHS R01 AI091790NIAID NIH HHS R01AI091790NIMH NIH HHS R03 MH096537
6 · The paper itself

Abstract

Biotin biosynthesis is essential for survival and persistence of Mycobacterium tuberculosis (Mtb) in vivo. The aminotransferase BioA, which catalyzes the antepenultimate step in the biotin pathway, has been established as a promising target due to its vulnerability to chemical inhibition. We performed high-throughput screening (HTS) employing a fluorescence displacement assay and identified a diverse set of potent inhibitors including many diversity-oriented synthesis (DOS) scaffolds. To efficiently select only hits targeting biotin biosynthesis, we then deployed a whole-cell counterscreen in biotin-free and biotin-containing medium against wild-type Mtb and in parallel with isogenic bioA Mtb strains that possess differential levels of BioA expression. This counterscreen proved crucial to filter out compounds whose whole-cell activity was off target as well as identify hits with weak, but measurable whole-cell activity in BioA-depleted strains. Several of the most promising hits were cocrystallized with BioA to provide a framework for future structure-based drug design efforts.

Indexed as

Antitubercular AgentsBacterial ProteinsBinding SitesBiotinCalorimetryCrystallography, X-RayDrug DesignHigh-Throughput Screening AssaysHydrogen BondingMicrobial Sensitivity TestsMolecular Dynamics SimulationMycobacterium tuberculosisProtein Structure, TertiaryStructure-Activity RelationshipTransaminasesAntitubercular AgentsBacterial ProteinsBioA protein, bacteriaBiotinTransaminases

Identifiers

PMID25556942
PMCPMC4305006

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.