Evidence map›Paper›PMID 25556236›Full record

ArticleMolecular biology and evolution2015

Intraspecific polymorphism, interspecific divergence, and the origins of function-altering mutations in deer mouse hemoglobin.

Chandrasekhar Natarajan, Federico G Hoffmann, Hayley C Lanier, Cole J Wolf, Zachary A Cheviron, Matthew L Spangler, Roy E Weber, Angela Fago, Jay F Storz

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 131 citations in OpenAlex.

  1. Article
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  9. Local adaptation, plasticity, and evolved resistance to hypoxic cold stress in high-altitude deer mice.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Evolved changes in phenotype across skeletal muscles in deer mice native to high altitude.American journal of physiology. Regulatory, integrative and comparative physiology · 2024
    Article
  12. Adaptive structural and functional evolution of the placenta protects fetal growth in high-elevation deer mice.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
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  15. Article
  16. Review
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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Chandrasekhar NatarajanSchool of Biological Sciences, University of Nebraska, Lincoln.
Federico G HoffmannDepartment of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University.
Hayley C LanierDepartment of Zoology and Physiology, University of Wyoming at Casper.
Cole J WolfDepartment of Animal Biology, School of Integrative Biology, University of Illinois, Urbana-Champaign.
Zachary A ChevironDepartment of Animal Biology, School of Integrative Biology, University of Illinois, Urbana-Champaign.
Matthew L SpanglerAnimal Science Department, University of Nebraska, Lincoln.
Roy E WeberZoophysiology, Department of Bioscience, Aarhus University, Aarhus, Denmark.
Angela FagoZoophysiology, Department of Bioscience, Aarhus University, Aarhus, Denmark.
Jay F StorzSchool of Biological Sciences, University of Nebraska, Lincoln jstorz2@unl.edu.
University of Nebraska–Lincoln · USAarhus University · DKUniversity of Illinois Urbana-Champaign · USCasper College · USMississippi State University · US

Funding

Mutational Pleiotropy, Epistasis, and the Adaptive Evolution of Hemoglobin FunctionR01HL087216 · NHLBI · UNIVERSITY OF NEBRASKA LINCOLN · PI STORZ, JAY · 2008 to 2021
$4.5M
NHLBI NIH HHS HL087216NHLBI NIH HHS R01 HL087216
6 · The paper itself

Abstract

Major challenges for illuminating the genetic basis of phenotypic evolution are to identify causative mutations, to quantify their functional effects, to trace their origins as new or preexisting variants, and to assess the manner in which segregating variation is transduced into species differences. Here, we report an experimental analysis of genetic variation in hemoglobin (Hb) function within and among species of Peromyscus mice that are native to different elevations. A multilocus survey of sequence variation in the duplicated HBA and HBB genes in Peromyscus maniculatus revealed that function-altering amino acid variants are widely shared among geographically disparate populations from different elevations, and numerous amino acid polymorphisms are also shared with closely related species. Variation in Hb-O2 affinity within and among populations of P. maniculatus is attributable to numerous amino acid mutations that have individually small effects. One especially surprising feature of the Hb polymorphism in P. maniculatus is that an appreciable fraction of functional standing variation in the two transcriptionally active HBA paralogs is attributable to recurrent gene conversion from a tandemly linked HBA pseudogene. Moreover, transpecific polymorphism in the duplicated HBA genes is not solely attributable to incomplete lineage sorting or introgressive hybridization; instead, it is mainly attributable to recurrent interparalog gene conversion that has occurred independently in different species. Partly as a result of concerted evolution between tandemly duplicated globin genes, the same amino acid changes that contribute to variation in Hb function within P. maniculatus also contribute to divergence in Hb function among different species of Peromyscus. In the case of function-altering Hb mutations in Peromyscus, there is no qualitative or quantitative distinction between segregating variants within species and fixed differences between species.

Indexed as

Evolution, MolecularMultigene FamilyMutationPolymorphism, GeneticAmino Acid SequenceAnimalsGene ConversionHemoglobin SubunitsMolecular Sequence DataPeromyscusHemoglobin Subunitsadaptationgene conversiongene duplicationhemoglobinhigh altitudestanding variation

Identifiers

PMID25556236
PMCPMC4379404
OpenAlexW2139311833

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.