Evidence map›Paper›PMID 25556189›Full record

ArticleApplied and environmental microbiology2015

Environmental surveillance of poliovirus in sewage water around the introduction period for inactivated polio vaccine in Japan.

Tomofumi Nakamura, Mitsuhiro Hamasaki, Hideaki Yoshitomi, Tetsuya Ishibashi, Chiharu Yoshiyama, Eriko Maeda, Nobuyuki Sera, Hiromu Yoshida

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tomofumi NakamuraDepartment of Virology II, National Institute of Infectious Diseases, Gakuen, Musashimurayama-shi, Tokyo, Japan Fukuoka Institute of Health and Environmental Sciences, Dazaifu-shi, Fukuoka, Japan.
Mitsuhiro HamasakiFukuoka Institute of Health and Environmental Sciences, Dazaifu-shi, Fukuoka, Japan.
Hideaki YoshitomiFukuoka Institute of Health and Environmental Sciences, Dazaifu-shi, Fukuoka, Japan.
Tetsuya IshibashiFukuoka Institute of Health and Environmental Sciences, Dazaifu-shi, Fukuoka, Japan.
Chiharu YoshiyamaFukuoka Institute of Health and Environmental Sciences, Dazaifu-shi, Fukuoka, Japan.
Eriko MaedaFukuoka Institute of Health and Environmental Sciences, Dazaifu-shi, Fukuoka, Japan.
Nobuyuki SeraFukuoka Institute of Health and Environmental Sciences, Dazaifu-shi, Fukuoka, Japan sera@fihes.pref.fukuoka.jp.
Hiromu YoshidaDepartment of Virology II, National Institute of Infectious Diseases, Gakuen, Musashimurayama-shi, Tokyo, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Environmental virus surveillance was conducted at two independent sewage plants from urban and rural areas in the northern prefecture of the Kyushu district, Japan, to trace polioviruses (PVs) within communities. Consequently, 83 PVs were isolated over a 34-month period from April 2010 to January 2013. The frequency of PV isolation at the urban plant was 1.5 times higher than that at the rural plant. Molecular sequence analysis of the viral VP1 gene identified all three serotypes among the PV isolates, with the most prevalent serotype being type 2 (46%). Nearly all poliovirus isolates exhibited more than one nucleotide mutation from the Sabin vaccine strains. During this study, inactivated poliovirus vaccine (IPV) was introduced for routine immunization on 1 September 2012, replacing the live oral poliovirus vaccine (OPV). Interestingly, the frequency of PV isolation from sewage waters declined before OPV cessation at both sites. Our study highlights the importance of environmental surveillance for the detection of the excretion of PVs from an OPV-immunized population in a highly sensitive manner, during the OPV-to-IPV transition period.

Indexed as

Capsid ProteinsEnvironmental MonitoringGenetic VariationGenotypeJapanMolecular Sequence DataPoint MutationPoliovirusPoliovirus Vaccine, InactivatedSequence Analysis, DNASewageVaccinationCapsid ProteinsPoliovirus Vaccine, InactivatedSewageVP1 protein, Poliovirus

Identifiers

PMID25556189
PMCPMC4325164

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.