Evidence map›Paper›PMID 25556170›Full record

ArticleJournal of the American Society of Nephrology : JASN2015

Integration of Cistromic and Transcriptomic Analyses Identifies Nphs2, Mafb, and Magi2 as Wilms' Tumor 1 Target Genes in Podocyte Differentiation and Maintenance.

Lihua Dong, Stefan Pietsch, Zenglai Tan, Birgit Perner, Ralph Sierig, Dagmar Kruspe, Marco Groth, Ralph Witzgall, Hermann-Josef Gröne, Matthias Platzer and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Principles of Zebrafish Nephron Segment Development.Journal of developmental biology · 2023
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Renal cell markers: lighthouses for managing renal diseases.American journal of physiology. Renal physiology · 2021
    Article
  15. Every Beat You Take-The Wilms' Tumor Suppressor WT1 and the Heart.International journal of molecular sciences · 2021
    Review
  16. Article
  17. A novel WT1 gene mutation in a chinese girl with denys-drash syndrome.Journal of clinical laboratory analysis · 2021
    Article
  18. Article
  19. The Wilms Tumor GeneFrontiers in cell and developmental biology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Lihua DongDepartments of Molecular Genetics and.
Stefan PietschDepartments of Molecular Genetics and.
Zenglai TanDepartments of Molecular Genetics and.
Birgit PernerDepartments of Molecular Genetics and.
Ralph SierigDepartments of Molecular Genetics and.
Dagmar KruspeDepartments of Molecular Genetics and.
Marco GrothGenome Analysis, Leibniz Institute for Age Research, Fritz Lipmann Institute, Jena, Germany;
Ralph WitzgallInstitute for Molecular and Cellular Anatomy, University of Regensburg, Regensburg, Germany;
Hermann-Josef GröneDepartment of Cellular and Molecular Pathology, German Cancer Research Center, Heidelberg, Germany; and.
Matthias PlatzerGenome Analysis, Leibniz Institute for Age Research, Fritz Lipmann Institute, Jena, Germany;
Christoph EnglertDepartments of Molecular Genetics and Faculty of Biology and Pharmacy, Friedrich Schiller University of Jena, Jena, Germany cenglert@fli-leibniz.de.
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI) · DEFriedrich Schiller University Jena · DEGerman Cancer Research Center · DEUniversity of Regensburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Wilms' tumor suppressor gene 1 (WT1) encodes a zinc finger transcription factor. Mutation of WT1 in humans leads to Wilms' tumor, a pediatric kidney tumor, or other kidney diseases, such as Denys-Drash and Frasier syndromes. We showed previously that inactivation of WT1 in podocytes of adult mice results in proteinuria, foot process effacement, and glomerulosclerosis. However, the WT1-dependent transcriptional network regulating podocyte development and maintenance in vivo remains unknown. Here, we performed chromatin immunoprecipitation followed by high-throughput sequencing with glomeruli from wild-type mice. Additionally, we performed a cDNA microarray screen on an inducible podocyte-specific WT1 knockout mouse model. By integration of cistromic and transcriptomic analyses, we identified the WT1 targetome in mature podocytes. To further analyze the function and targets of WT1 in podocyte maturation, we used an Nphs2-Cre model, in which WT1 is deleted during podocyte differentiation. These mice display anuria and kidney hemorrhage and die within 24 hours after birth. To address the evolutionary conservation of WT1 targets, we performed functional assays using zebrafish as a model and identified Nphs2, Mafb, and Magi2 as novel WT1 target genes required for podocyte development. Our data also show that both Mafb and Magi2 are required for normal development of the embryonic zebrafish kidney. Collectively, our work provides insights into the transcriptional networks controlled by WT1 and identifies novel WT1 target genes that mediate the function of WT1 in podocyte differentiation and maintenance.

Indexed as

Gene Expression RegulationAdaptor Proteins, Signal TransducingAnimalsCell DifferentiationGene Expression ProfilingGenes, Wilms TumorGuanylate KinasesIntracellular Signaling Peptides and ProteinsMafB Transcription FactorMembrane ProteinsMiceMice, KnockoutNerve Tissue ProteinsOligonucleotide Array Sequence AnalysisPodocytesRepressor ProteinsAdaptor Proteins, Signal TransducingGuanylate KinasesIntracellular Signaling Peptides and ProteinsMafb protein, mousemafb protein, zebrafishMafB Transcription Factormagi2a protein, zebrafishMagi2 protein, mouseMembrane ProteinsNerve Tissue ProteinsNPHS2 proteinRepressor ProteinsWt1a protein, zebrafishWT1 protein, mouseWT1 ProteinsZebrafish Proteinschronic hemodialysiseconomic analysisepidemiology and outcomesESRDoutcomesvascular access

Identifiers

PMID25556170
PMCPMC4552121
OpenAlexW2133616161

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.