Evidence map›Paper›PMID 25554596›Full record

ArticleInsect biochemistry and molecular biology2015

Structural features, evolutionary relationships, and transcriptional regulation of C-type lectin-domain proteins in Manduca sexta.

Xiang-Jun Rao, Xiaolong Cao, Yan He, Yingxia Hu, Xiufeng Zhang, Yun-Ru Chen, Gary Blissard, Michael R Kanost, Xiao-Qiang Yu, Haobo Jiang

Open access · greenAbstract read
In one paragraph

Article in Insect biochemistry and molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 84 citations in OpenAlex.

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  12. Role of Lectin in the Response ofFrontiers in immunology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Xiang-Jun RaoSchool of Plant Protection, Anhui Agricultural University, Hefei, Anhui 230036, PR China.
Xiaolong CaoDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
Yan HeDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
Yingxia HuDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
Xiufeng ZhangDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA.
Yun-Ru ChenBoyce Thompson Institute, Cornell University, Ithaca, NY 14853, USA.
Gary BlissardBoyce Thompson Institute, Cornell University, Ithaca, NY 14853, USA.
Michael R KanostDepartment of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, KS 66506, USA.
Xiao-Qiang YuDivision of Molecular Biology and Biochemistry, School of Biological Sciences, University of Missouri-Kansas City, Kansas City, MO 64110, USA.
Haobo JiangDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA. Electronic address: haobo.jiang@okstate.edu.
Oklahoma State University · USCornell University · USAnhui Agricultural University · CNKansas State University · USUniversity of Missouri–Kansas City · US

Funding

Initiation and Regulation of Prophenoloxidase ActivationR01GM058634 · NIGMS · OKLAHOMA STATE UNIVERSITY STILLWATER · PI JIANG, HAOBO · 1999 to 2022
$4.0M
Supplement 2 to promote diversity in health related res.: protease systems in insR37GM041247 · NIGMS · KANSAS STATE UNIVERSITY · PI KANOST, MICHAEL R · 2011 to 2020
$3.8M
SERINE PROTEINASE INHIBITORS IN INSECTSR01GM041247 · NIGMS · KANSAS STATE UNIVERSITY · PI KANOST, MICHAEL R · 1994 to 2010
$3.1M
NIGMS NIH HHS GM58634NIGMS NIH HHS R01 GM041247NIGMS NIH HHS R01 GM058634NIGMS NIH HHS R37 GM041247
6 · The paper itself

Abstract

C-type lectins (CTLs) are a large family of Ca(2+)-dependent carbohydrate-binding proteins recognizing various glycoconjugates and functioning primarily in immunity and cell adhesion. We have identified 34 CTLDP (for CTL-domain protein) genes in the Manduca sexta genome, which encode proteins with one to three CTL domains. CTL-S1 through S9 (S for simple) have one or three CTL domains; immulectin-1 through 19 have two CTL domains; CTL-X1 through X6 (X for complex) have one or two CTL domains along with other structural modules. Nine simple CTLs and seventeen immulectins have a signal peptide and are likely extracellular. Five complex CTLs have both an N-terminal signal peptide and a C-terminal transmembrane region, indicating that they are membrane anchored. Immulectins exist broadly in Lepidoptera and lineage-specific gene duplications have generated three clusters of fourteen genes in the M. sexta genome, thirteen of which have similar expression patterns. In contrast to the family expansion, CTL-S1∼S6, S8, and X1∼X6 have 1:1 orthologs in at least four lepidopteran/dipteran/coleopteran species, suggestive of conserved functions in a wide range of holometabolous insects. Structural modeling suggests the key residues for Ca(2+)-dependent or independent binding of certain carbohydrates by CTL domains. Promoter analysis identified putative κB motifs in eighteen of the CTL genes, which did not have a strong correlation with immune inducibility in the mRNA or protein levels. Together, the gene identification, sequence comparisons, structure modeling, phylogenetic analysis, and expression profiling establish a solid foundation for future studies of M. sexta CTL-domain proteins.

Indexed as

AnimalsBiological EvolutionGene Expression RegulationGenome, InsectInsect ProteinsLectins, C-TypeManducaPhylogenyProtein Structure, TertiaryInsect ProteinsLectins, C-TypeCarbohydrate recognition domainComparative genomicsExpression profilingInsect immunityPattern recognition

Identifiers

PMID25554596
PMCPMC4476918
OpenAlexW2033580429

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.