Evidence map›Paper›PMID 25553907›Full record

ArticleBMC genomics2015

Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing.

Doori Park, Je Won Jung, Beom-Soon Choi, Murukarthick Jayakodi, Jeongsoo Lee, Jongsung Lim, Yeisoo Yu, Yong-Soo Choi, Myeong-Lyeol Lee, Yoonseong Park and 5 more

Abstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  11. Epigenetic Mechanisms inCurrent issues in molecular biology · 2025
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  14. Genomic signatures associated with the evolutionary loss of egg yolk in parasitoid wasps.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  18. Full-Length Transcriptome Profile ofInternational journal of molecular sciences · 2024
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30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Doori Park
Je Won Jung
Beom-Soon Choi
Murukarthick Jayakodi
Jeongsoo Lee
Jongsung Lim
Yeisoo Yu
Yong-Soo Choi
Myeong-Lyeol Lee
Yoonseong Park
Ik-Young Choi
Tae-Jin Yang
Owain R Edwards
Gyoungju NahBiomodulation Major, Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea. gjnah@snu.ac.kr.
Hyung Wook Kwon

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe honey bee is an important model system for increasing understanding of molecular and neural mechanisms underlying social behaviors relevant to the agricultural industry and basic science. The western honey bee, Apis mellifera, has served as a model species, and its genome sequence has been published. In contrast, the genome of the Asian honey bee, Apis cerana, has not yet been sequenced. A. cerana has been raised in Asian countries for thousands of years and has brought considerable economic benefits to the apicultural industry. A cerana has divergent biological traits compared to A. mellifera and it has played a key role in maintaining biodiversity in eastern and southern Asia. Here we report the first whole genome sequence of A. cerana.

resultsUsing de novo assembly methods, we produced a 238 Mbp draft of the A. cerana genome and generated 10,651 genes. A.cerana-specific genes were analyzed to better understand the novel characteristics of this honey bee species. Seventy-two percent of the A. cerana-specific genes had more than one GO term, and 1,696 enzymes were categorized into 125 pathways. Genes involved in chemoreception and immunity were carefully identified and compared to those from other sequenced insect models. These included 10 gustatory receptors, 119 odorant receptors, 10 ionotropic receptors, and 160 immune-related genes.

conclusionsThis first report of the whole genome sequence of A. cerana provides resources for comparative sociogenomics, especially in the field of social insect communication. These important tools will contribute to a better understanding of the complex behaviors and natural biology of the Asian honey bee and to anticipate its future evolutionary trajectory.

Indexed as

Genome, InsectSequence Analysis, DNATranscriptomeAnimalsAsiaBeesHigh-Throughput Nucleotide SequencingImmune SystemPhylogenyReceptors, Ionotropic GlutamateReceptors, OdorantReceptors, Ionotropic GlutamateReceptors, Odorant

Identifiers

PMID25553907
PMCPMC4326529

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Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.