Evidence map›Paper›PMID 25553291›Full record

ArticleAnnals of laboratory medicine2015

Alteration of the SETBP1 gene and splicing pathway genes SF3B1, U2AF1, and SRSF2 in childhood acute myeloid leukemia.

Hyun-Woo Choi, Hye-Ran Kim, Hee-Jo Baek, Hoon Kook, Duck Cho, Jong-Hee Shin, Soon-Pal Suh, Dong-Wook Ryang, Myung-Geun Shin

Open access · hybridAbstract read
In one paragraph

Article in Annals of laboratory medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Oncotarget · 2017
    Review
  6. Somatic SETBP1 mutations in myeloid neoplasms.International journal of hematology · 2017
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Hyun-Woo ChoiDepartment of Laboratory Medicine, Chonnam National University Hwasun Hospital, Hwasun, Korea.
Hye-Ran KimBrain Korea 21 Plus Project, Chonnam National University Medical School, Gwangju, Korea. ; Laboratory of Metabolism, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Hee-Jo BaekDepartment of Pediatrics, Chonnam National University Hwasun Hospital, Hwasun, Korea. ; Environmental Health Center for Childhood Leukemia and Cancer, Chonnam National University Hwasun Hospital, Hwasun, Korea.
Hoon KookDepartment of Pediatrics, Chonnam National University Hwasun Hospital, Hwasun, Korea. ; Environmental Health Center for Childhood Leukemia and Cancer, Chonnam National University Hwasun Hospital, Hwasun, Korea.
Duck ChoDepartment of Laboratory Medicine, Chonnam National University Hwasun Hospital, Hwasun, Korea.
Jong-Hee ShinDepartment of Laboratory Medicine, Chonnam National University Hwasun Hospital, Hwasun, Korea.
Soon-Pal SuhDepartment of Laboratory Medicine, Chonnam National University Hwasun Hospital, Hwasun, Korea.
Dong-Wook RyangDepartment of Laboratory Medicine, Chonnam National University Hwasun Hospital, Hwasun, Korea.
Myung-Geun ShinDepartment of Laboratory Medicine, Chonnam National University Hwasun Hospital, Hwasun, Korea. ; Brain Korea 21 Plus Project, Chonnam National University Medical School, Gwangju, Korea. ; Environmental Health Center for Childhood Leukemia and Cancer, Chonnam National University Hwasun Hospital, Hwasun, Korea.
Chonnam National University Hwasun Hospital · KRNational Institutes of Health · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRecurrent somatic SET-binding protein 1 (SETBP1) and splicing pathway gene mutations have recently been found in atypical chronic myeloid leukemia and other hematologic malignancies. These mutations have been comprehensively analyzed in adult AML, but not in childhood AML. We investigated possible alteration of the SETBP1, splicing factor 3B subunit 1 (SF3B1), U2 small nuclear RNA auxiliary factor 1 (U2AF1), and serine/arginine-rich splicing factor 2 (SRSF2) genes in childhood AML.

methodsCytogenetic and molecular analyses were performed to reveal chromosomal and genetic alterations. Sequence alterations in the SETBP1, SF3B1, U2AF1, and SRSF2 genes were examined by using direct sequencing in a cohort of 53 childhood AML patients.

resultsChildhood AML patients did not harbor any recurrent SETBP1 gene mutations, although our study did identify a synonymous mutation in one patient. None of the previously reported aberrations in the mutational hotspot of SF3B1, U2AF1, and SRSF2 were identified in any of the 53 patients.

conclusionsAlterations of the SETBP1 gene or SF3B1, U2AF1, and SRSF2 genes are not common genetic events in childhood AML, implying that the mutations are unlikely to exert a driver effect in myeloid leukemogenesis during childhood.

Indexed as

AdolescentCarrier ProteinsChildChild, PreschoolCohort StudiesCytogenetic AnalysisDNA Mutational AnalysisFemaleGene FrequencyGenotypeHumansInfantLeukemia, Myeloid, AcuteMaleNuclear ProteinsPhosphoproteinsCarrier ProteinsNuclear ProteinsPhosphoproteinsRibonucleoproteinsRibonucleoprotein, U2 Small NuclearRNA Splicing FactorsSerine-Arginine Splicing FactorsSETBP1 protein, humanSF3B1 protein, humanSplicing Factor U2AFSRSF2 protein, humanU2AF1 protein, humanAMLChildhoodSETBP1SF3B1SRSF2U2AF1

Identifiers

PMID25553291
PMCPMC4272941
OpenAlexW2146135098

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.